Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03273 ATGGAGCTTCGTTCTCGTCGACGCCTTTCTGATACTATGGATTCCGCGGCCGACAAGGGGAAGCGGCCGAAAGATGATACTGATGAAGATGATAATCATGTTGTGTCTTTGAAATCTGATTCTGATTATGAAGATGAAGACTTTGATGGGAATCACCCTTTTGACTTGAATCAAGACCCAACTATAAGCTTTAGTGTTTCTGATGGAGAAGATAATGCTTCTGATTTATCTGATTGTAGTGAGCCTTTATCTAAACGGGTAAAGGCACAGTCCATCAGAAAGGGAGGAAGAAAATCCAAGATAGAAATCGGAGACTTGAATGATGAAGAGAGAGTTTTGGAGAACAATGATGAAGAAGCTCCAATCGATTTTACTAAGGTGAaaaagaagaaacaagcaaagaaaacaaaaAAGGGTGATTCTAAGCCAGTTTTGTTATGGCATGCTTGGAAAGAGGAACATGAGAGATGGATTGATCAGAATTTGTTGGAAGACGCTAACTTAGATCAAAGTGAAGTGATGAATGAGACAGCCGAGGCACCGTCTGATCTGATTGTTCCTTTGTTGAGGTACCAAAGGGAGTGGTTAGCCTGGGGTTTGAAGCAGGAAAATTCTGCAACTAGAGGAGGAATCCTTGCTGATGAAATGGGTATGGGAAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGTGAATTACAACAAATGTGTTGTGAACTGGATGAACACTCACATTCACCTGGGTCATCTAAAGTCCTGCCTGCGGTTAAAGGAACACTAGTCATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATCGATTTACTTTGAAAGGTAGCACCAAGGTTCTGGTTTATCATGGGGCGAAGAGAGGAAAGAGGGCTGAACATTTCTCGGAGTATGATTTTGTAATAACAACATATTCTATTGTTGAATCCGAGTACAGAAAATATGTGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGAAAATTATTTTACCAGAGGAAGTTATCTTATCACCAGAGGTACTTTTGTGGGCCTGGGGCTGTTAAAACAGAAAAGCAATCAAAGCAAACCAGTAAAAGAAATAAAGCCCATAGTTCAAAGTGGGATGGAGAGTTGGAACAACAGAGTTCTACCAAAAAGAAGGAAGAGGAAATGCCCTTCATAGTAGAAGGCAATGAGAAGTCATTTCTGCATGCTTTTAAGTGGCAGAGGATCATATTGGATGAGGCACACTATATAAAATCTAGGCATTGTAACACTGCAAAAGCGGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCATTAAGTGGCACACCCCTTCAGAATCGTGTTGGAGAGCTGTATTCTTTGGTACGATTTCTGCAGATAGTTCCTTATTCCTATTACCTGTGCAAGGACTGTGATTGCAGGATACTTGATCATAGCTCCTCTAAACAATGTTCAAACTGCTCCCACAGTTCTGTTAGGCATTTTTGTTGGTGGAACAAAAATATTGCCACACCAATCCAATCATATGGGTATGGTGATGATGGGAAAAGAGCTATGATATTACTCAAAAACAAAATTTTAAAGAGCATAGTTTTAAGGCGAACTAAAATAGGCAGGGCAGCTGATCTTGCACTTCCACCTAGGATCGTTTCATTGAGGAGGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAGTCTCTATACAATGAAAGTCAGGCACAATTTAATACGTATGTCGAAGAAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGGCTACGTCAGGCCGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCAGCAGCGCTAAAAGGTGGGAACTTGACTAGTAATGGTAATGTTGAACAAGCATGTGGCCTTTGTCATGATGCAGTTGAAGATCCTGTGGTTACCTCTTGTGAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCCTTAGGACGAGTATCATGCCCCTCATGCTCTCAATTACTCACTGTTGATTTGACTTTCAACAAGGATGTTGTGGTTACTAAAACAACAATTAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAGATCGAGAATTTTCAGACTAGTACTAAAATAGAGGCATTGAGAGAAGAGATTAGATTTATGGTTGAAAGGGATGGTTCTGCAAAAGCGATTGTTTTTAGTCAGTTCACTTCATTCTTGGATCTCATAAACTACTCCTTACAGAAGTCAGGTGTATCTTGCGTTCAATTGAATGGAAGTATGACATTGGGTGCTCGGGATGCTGCCATTAAGAAATTTACTGATGATCCAGACTGCAAAATATTTCTCATGAGCTTGAAAGCCGGAGGTGTTGCTCTGAATTTGACCGTAGCGTCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGACAATACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATCGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTTGTATTTGAAGGGACTGTAGGCGGCTCTTCTGAGGCTCTGGGGAAATTGACGGTGGCCGACTTGAAATTTCTCTTTGTTACCTAA 2667 0.4061 MELRSRRRLSDTMDSAADKGKRPKDDTDEDDNHVVSLKSDSDYEDEDFDGNHPFDLNQDPTISFSVSDGEDNASDLSDCSEPLSKRVKAQSIRKGGRKSKIEIGDLNDEERVLENNDEEAPIDFTKVKKKKQAKKTKKGDSKPVLLWHAWKEEHERWIDQNLLEDANLDQSEVMNETAEAPSDLIVPLLRYQREWLAWGLKQENSATRGGILADEMGMGKTIQAIALVLAKRELQQMCCELDEHSHSPGSSKVLPAVKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGKRAEHFSEYDFVITTYSIVESEYRKYVMPPKEKCPYCGKLFYQRKLSYHQRYFCGPGAVKTEKQSKQTSKRNKAHSSKWDGELEQQSSTKKKEEEMPFIVEGNEKSFLHAFKWQRIILDEAHYIKSRHCNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRILDHSSSKQCSNCSHSSVRHFCWWNKNIATPIQSYGYGDDGKRAMILLKNKILKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGGNLTSNGNVEQACGLCHDAVEDPVVTSCEHTFCKGCLIDFSASLGRVSCPSCSQLLTVDLTFNKDVVVTKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLNGSMTLGARDAAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTVADLKFLFVT 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03273 888 SMART ultradead3 184 469 IPR014001 -
Car06g03273 888 Coils Coil 705 725 - -
Car06g03273 888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 464 IPR014001 -
Car06g03273 888 SUPERFAMILY RING/U-box 633 680 - -
Car06g03273 888 CDD DEXDc_SHPRH-like 188 537 - -
Car06g03273 888 Gene3D - 354 551 IPR038718 -
Car06g03273 888 MobiDBLite consensus disorder prediction 1 82 - -
Car06g03273 888 MobiDBLite consensus disorder prediction 1 41 - -
Car06g03273 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 886 IPR027417 -
Car06g03273 888 Pfam Helicase conserved C-terminal domain 718 832 IPR001650 -
Car06g03273 888 MobiDBLite consensus disorder prediction 56 79 - -
Car06g03273 888 ProSitePatterns Zinc finger RING-type signature. 651 660 IPR017907 -
Car06g03273 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 537 IPR027417 -
Car06g03273 888 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 400 723 - -
Car06g03273 888 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 725 885 - -
Car06g03273 888 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 110 376 - -
Car06g03273 888 Gene3D - 190 329 IPR038718 -
Car06g03273 888 Pfam Zinc finger, C3HC4 type (RING finger) 636 675 IPR018957 GO:0046872
Car06g03273 888 Pfam SNF2-related domain 202 612 IPR000330 GO:0005524|GO:0140658
Car06g03273 888 SMART helicmild6 749 832 IPR001650 -
Car06g03273 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 702 IPR013083 -
Car06g03273 888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 878 IPR001650 -
Car06g03273 888 Gene3D - 552 882 IPR027417 -
Car06g03273 888 CDD SF2_C_SNF 716 843 - -
Car06g03273 888 SMART ring_2 636 675 IPR001841 -
Car06g03273 888 ProSiteProfiles Zinc finger RING-type profile. 636 676 IPR001841 -
Car06g03273 888 MobiDBLite consensus disorder prediction 360 391 - -
Car06g03273 888 PANTHER - 110 376 - -
Car06g03273 888 PANTHER - 400 723 - -
Car06g03273 888 PANTHER - 725 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03273 Car-Chr6 61205583 61215297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03273 112 888 RAD5 or RAD16-like Gene Family AT1G05120 65.952 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car06g03273 SNF2_N 5.3e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03273 K15083 - gmx:100798333 1288.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03273 06 61205583 61215297 Car06g03273 06 61205583 61215297 ECH