Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03249 ATGTTTCAGTCAAACTTGATGGAAGGTGGTCAGTTCCATCCATTAGAGATGATTCAAAACACTTCAGAAAGTGATGTCATCCCTCGAATCCGTGAAGATGAGTGCTTTGAAAGTGCCACAAAATCTTGCAGTGAAAACCATGAAGGTGGTGGTGCTTCCGGTGAAGACCAAGAACCAAAGCCTAAAAGAAAACGTTACCACCGTCACACTCAGCACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGAAAGGAGTTAAGCAGAGAATTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACACAACATGAACGGTCAGAGAACACACAACTTAGACAAGAAAATGAAAAACTTAGGGCAGATAACATGAGGTATAGGGAAGCACTTAGCAATGCTTCATGCCCTAATTGTGGTGGTCCTACTGCTATAGGTGAAATGTCTTTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTTAGAGAAGAGATTGATAGGATTTCAGCAATTGCAGCCAAGTACGTAGGAAAACCAGTTGTAAACTATTCAAACATTGCAGCATCTCTTCCACCACGTCCATTAGAACATGGAGTTGGTGCTGGTTTTGGAAACCAACAAGGACTTGGCATGGACATATATGGAACTAGTGGTGATCTTCTAAGATCAATAAGTGGGCCCACTGAAGCAGACAAACCAATAATAATTGAGTTAGCTGTTGCAGCTATGGAAGAGCTAACTGGAATGGCACAAATGGGTGAACCTCTTTGGTTAACTACACTTGATGGTGCTGCTAATGTCCTTAATGAAGATGAATATGTTAGGTCTTTTCCACGTGGAATTGGACCTAAACCTAATGGATTTAAGTGTGAAGCTTCAAGAGAAACTTGTGTTGTTATTATGAATCATGTTAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCAACAGTTTTTGCTGGTATTGTTTCAAGAGCCATGACTGTTGAAGTGTTGTCAACTGGTGTGGCAGGGAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGCTTCAAGTACCATCACCTCTTGTCCCAACTCGTGAGAGTTATTTTGTGAGATATTGCAAACAACATACAGATGGAACATGGGCTGTTGTGGATGTTTCTTTGGATAATCTTCGTCCAAATCCTTCTTCAAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGTTACTCAAAGGTAACATGGGTTGAGCATGTGGAAGTTGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGTACTGGAAATGCATTTGGTGCAAAACGTTGGGTTGCAACATTAGATAGACAATGTGAAAGGCTTGCTAGCTCAATGGCTACAAACATTCCAACTGTAGATGTTGGTGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAACTAGCAGAGAGAATGGTGATGAGTTTTTGTGGTGGAGTGAGTGCATCAACAGCACACACGTGGACAACATTAGCAGGAACAGGAGCTGATGATGTTAGAGTGATGACACGTAAGAGTGTTGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCACCTAAAAGAGTTTTTGATTTCCTTCGCGATGAAAACTCAAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTACAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAATTGTGTCTCTCTACTTCGAGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTAATATTACAAGAGAGTCTAACAGATTCAACAGGATCATTTGTAATATATGCACCGGTAGACATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCAGGATTTGCTATCCTCTCTGatggaaatggaaatggaattggtgatgaaaatggaCAAGCTGGTGTTTGTGGTGGATCACTTTTAACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACTGCTAAACTTTCTCTTGGATCTGTTGCTACTGTTAATAGTCTTATTGCTTGTACTGTTGAGAGAATCAAGGCTTCTTTGTCTGGTGAAACTGCTTAA 2208 0.4004 MFQSNLMEGGQFHPLEMIQNTSESDVIPRIREDECFESATKSCSENHEGGGASGEDQEPKPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENTQLRQENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNIAASLPPRPLEHGVGAGFGNQQGLGMDIYGTSGDLLRSISGPTEADKPIIIELAVAAMEELTGMAQMGEPLWLTTLDGAANVLNEDEYVRSFPRGIGPKPNGFKCEASRETCVVIMNHVNLVEILMDVNQWSTVFAGIVSRAMTVEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHTDGTWAVVDVSLDNLRPNPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMMKLAERMVMSFCGGVSASTAHTWTTLAGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESLTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILSDGNGNGIGDENGQAGVCGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKASLSGETA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03249 735 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 16 732 - -
Car06g03249 735 Gene3D - 51 137 - -
Car06g03249 735 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Car06g03249 735 SMART START_1 254 474 IPR002913 GO:0008289
Car06g03249 735 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Car06g03249 735 Coils Coil 119 146 - -
Car06g03249 735 CDD START_ArGLABRA2_like 249 473 - -
Car06g03249 735 SMART HOX_1 61 124 IPR001356 GO:0003677
Car06g03249 735 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 732 IPR042160 -
Car06g03249 735 MobiDBLite consensus disorder prediction 38 71 - -
Car06g03249 735 SUPERFAMILY Bet v1-like 493 727 - -
Car06g03249 735 Pfam START domain 255 474 IPR002913 GO:0008289
Car06g03249 735 Gene3D - 299 469 IPR023393 -
Car06g03249 735 CDD homeodomain 62 121 IPR001356 GO:0003677
Car06g03249 735 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Car06g03249 735 ProSiteProfiles START domain profile. 245 477 IPR002913 GO:0008289
Car06g03249 735 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Car06g03249 735 SUPERFAMILY Bet v1-like 245 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03249 Car-Chr6 60189057 60195193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03249 30 735 Homeobox Transcription Factor Family AT1G05230 78.984 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car06g03249 START 2.1e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03249 K09338 - gmx:100782260 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03249 06 60189057 60195193 Car06g03249 06 60189057 60195193 ECH
Car01g02307 01 48876362 48881184 Car06g03249 06 60189057 60195193 PCT