Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03238 ATGGATGACATAGAAGTTTCCTCTAAAAATGTTTCAGCGGATTCTATTGATAAAAAATCCAGCAAAGCTTCAAAAATTGAATTTTCTGAAGATGAAGAAATCCTTATTACCATGGTTTATAATCTTGTTGGAGAGAGGTGGTCATTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATTGAAAAGTATTGGAATTCAAGATACACGAGTACTAGTGAATGA 228 0.3377 MDDIEVSSKNVSADSIDKKSSKASKIEFSEDEEILITMVYNLVGERWSLIAGRIPGRTAEEIEKYWNSRYTSTSE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03238 75 SMART sant 24 72 IPR001005 -
Car06g03238 75 SUPERFAMILY Homeodomain-like 11 69 IPR009057 -
Car06g03238 75 Pfam Myb-like DNA-binding domain 27 68 IPR001005 -
Car06g03238 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 73 - -
Car06g03238 75 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 13 73 - -
Car06g03238 75 MobiDBLite consensus disorder prediction 1 22 - -
Car06g03238 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Car06g03238 75 CDD SANT 30 67 IPR001005 -
Car06g03238 75 Gene3D - 27 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03238 Car-Chr6 60009130 60011261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03238 29 68 MYB Transcription Factor Family AT5G35550 65.000 7.23e-13 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car06g03238 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03238 - - gmx:100500494 102.834