Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03233 ATGGTTGAACGTAAGCAATTCAAAACGAGGTTATGTGTTCTTTATCAGAGAGGTCGCTGTAATCGCCATAACTGTAACTTTGCACATGGGAATGCTGAACTTCGACGATTCTCTTCCTCCTATAATGGCAGGAGAGATTATTTAGGTAATGACTTGAGGGATAAACTTGATAGAAGGCATTTATCACCTCCAAGATATTCACCAGCTCGAGATGCAAGAGGTCGGCAGACCATCCGTGAATACAGTCCACTGAGGTCTCCGGAGAAAAAAAGTGACAGAAGACATAGGAGAAAACACGACATCAGTGGCCATAGTGATATTTCTGGAAGTTTGAAAGTCTCTGAAAGAATTAATGATCAAGTTAAAGAGGGAAAATTGCTTCCCTCTGGTTCTAGGAATACTCTTGAGGAGCAGCTGAAGAAAGTACATTCCGATATCAACACTCTTGAGAACCGAAAATTCCAACTAGCGGTCTACCTAGATGAGAGTGTTCAAGAAGAGGATAGCCTAAATTCTAGAATTGAGGAACTTGAGGCTCAATTAAACAAGGAGAATGAGGAGTGTAAAAGAGTTACTTCAAGAATAAGAAAGTTTGTTCGAATGCACAATCAAAATTTGGAGTTGCAAGATGAACTGAAGAGATCACAGGTCCGACTTGAAAGGTTTGGAGTTCAACTTGTCTCAGACATTTCTAGAATTGGTGCTAATGAGGAAGATTTAAGCGTTGATATCGTAAGCAATGGTGAGAATATTGGTCTTCCTCCAATCATCAAACATAATTTGGAGCAGAATGGCAGATCTCCCTGCAGAAAAAGGCTGCATGTGGAACAAGATTCTGTGGAAGAGCTAAAACAAGGTAATAAATCTAAAGTAGGGCATTTAGTTGAAACAGCAAGAACCAGTAAGCGTACTCGATGGAATTTGTCTGCTCAATCAAATAACAAGGGTTACGAAGAGGCCCCAGACAATGGAATTGAAGTTACTAGGCACCAAGATCTTGAAGGAAAAAAGCATAAGAAAGGAATATGGAATTCTTCTAACAACATTCATTCAGAAAAGCTGAAGGAATCCAGGATCGAAGTGCCATCAACCAGTATGGCAGCTCATGTGTTTGAAGAGGAAGTTGAGATTGAACATGATAACGGAAATGATATCAAAGAAACTTCAAACACTGAAAATGACAACGGAGTGGTATTCCAGGTGAAGGGCACACCTTTTATGCTTCCCACAGATTTGATTCCCCATAGCAATTATTCGCAGTATGAGGGTAAAGACGAGAATGTGGATGTGGGTGGTCCTGATGAAGAGGCAGCAGGAGCACATGTGGACATAGTGGTCTAA 1341 0.4072 MVERKQFKTRLCVLYQRGRCNRHNCNFAHGNAELRRFSSSYNGRRDYLGNDLRDKLDRRHLSPPRYSPARDARGRQTIREYSPLRSPEKKSDRRHRRKHDISGHSDISGSLKVSERINDQVKEGKLLPSGSRNTLEEQLKKVHSDINTLENRKFQLAVYLDESVQEEDSLNSRIEELEAQLNKENEECKRVTSRIRKFVRMHNQNLELQDELKRSQVRLERFGVQLVSDISRIGANEEDLSVDIVSNGENIGLPPIIKHNLEQNGRSPCRKRLHVEQDSVEELKQGNKSKVGHLVETARTSKRTRWNLSAQSNNKGYEEAPDNGIEVTRHQDLEGKKHKKGIWNSSNNIHSEKLKESRIEVPSTSMAAHVFEEEVEIEHDNGNDIKETSNTENDNGVVFQVKGTPFMLPTDLIPHSNYSQYEGKDENVDVGGPDEEAAGAHVDIVV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03233 446 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 438 IPR045868 GO:0046872
Car06g03233 446 Coils Coil 160 194 - -
Car06g03233 446 MobiDBLite consensus disorder prediction 55 89 - -
Car06g03233 446 Coils Coil 132 152 - -
Car06g03233 446 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Car06g03233 446 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 438 - -
Car06g03233 446 MobiDBLite consensus disorder prediction 55 114 - -
Car06g03233 446 Gene3D - 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03233 Car-Chr6 59762935 59770891 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car06g03233 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03233 - - aprc:113858008 630.943