Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03213 ATGTTAGTGAAAAGCCATCATAAAGGGGATGGATCCAAGTCCCTCGCCGATACATTGGCAAGATGGAAAGAACATAACGCCCGCCTTGAATCGAGCGGCGAAGCTGAGAAGTCAACTAGGAAAGTTCCAGCCAAGGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTCGCGCTGTAATTACCGAGGTGTTAGACAAAGGACTTGGGGAAAATGGGTGGCCGAAATTCGGGAACCAAACAGAGGGAGTAGGCTTTGGTTAGGTACATTTCCCAATGCAGTCGGTGCTGCTCTTGCTTATGATGAAGCGGCAAGGGCAATGTATGGTTCTTGTGCGCGCCTGAACTTTCCGAATGTAGAGGTATCCAATTTCTCTCAGCTGGAATCTATGAAAGATTCTCCAACTTCAGATCATTCTGGTTCTGTAAAGACAACAATAGAGAATACTGAGTCTATGATATCGCTAAATAACGCTCGTGTAGATGCAGCTGAGGATGTTGACATGAAAAATCTTTCGTTATCCTTAAGTGTGACTGTGAATCATGAGGAAGGGGAGGTTGTATCAGGGACTAGTTCATCCCAGCCTTCATTGTCTTGA 609 0.4548 MLVKSHHKGDGSKSLADTLARWKEHNARLESSGEAEKSTRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPNAVGAALAYDEAARAMYGSCARLNFPNVEVSNFSQLESMKDSPTSDHSGSVKTTIENTESMISLNNARVDAAEDVDMKNLSLSLSVTVNHEEGEVVSGTSSSQPSLS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03213 202 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 170 - -
Car06g03213 202 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Car06g03213 202 MobiDBLite consensus disorder prediction 1 63 - -
Car06g03213 202 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Car06g03213 202 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Car06g03213 202 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Car06g03213 202 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Car06g03213 202 MobiDBLite consensus disorder prediction 1 43 - -
Car06g03213 202 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Car06g03213 202 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 170 - -
Car06g03213 202 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Car06g03213 202 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03213 Car-Chr6 59326655 59329077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03213 8 154 AP2-EREBP Transcription Factor Family AT2G40340 54.305 8.72e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g03213 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03213 - K09286 gmx:100499747 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02341 01 49213739 49215689 Car06g03213 06 59326655 59329077 PCT