Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03201 ATGGCTAGAACTCCTTCTTGTGACAAAAGTGGAATGAGGAAAGGTACTTGGACTGCTGAAGAAGATAGGAAATTAATTGCTTATGTTACTAGATATGGTTGCTGGAATTGGCGCCAACTTCCTAAGTTTGCAGGTCTTGCAAGGTGTGGAAAGAGTTGTAGATTGAGGTGGATGAATTATCTTAGGCCTAATATCAAAAGAGGGAACTTTACTCAAGATGAAGAGGAGTTGATTATCAAAATGCATAAAAAGATGGGGAATAAATGGTCTACCATTGCGGCTGAATTACCTGGAAGAACAGATAACGAAGTGAAGAATCATTGGCACACTTCACTCAAGAAGAGAGCTGAGGACAACACAAAAACAAATCAAGAAACCCAAACCTCAAAATCAAAAGACATTAATATGGAATCAACACAAGAACAAGATATTGTCTTTTTCCATGTTACTCCAACTAGTTCCCAATTTTCAGACACCACTAGCCCATTATCCCCATTTTCTTCCTCAAGTGAAGTCTCTTCTATAGATCAAAGTAATGAAAATTTGGTGCTTGAAGATGAATTTGGTTTTCTAGAAAATGTGGATGAAAGTTTTTGGAAAGACCCATATTTGGATAACATTTCCAACACACAAAGTGGAATAGTGCAAGGAGATACTACTAATAATTGTGCTTATCAAAATCAAGATACTATGATCCATGAAGATGCTTTTTTAGTGTCTCCTAATCATTCGTCCAATGAAAGTTTGTTTATGGATAATAATGATTTGTTTGGAAGCTTTCTAGAATCTTACAGAGAGTCAACAGTTGATAGTTTTTGGACACATCCATTTGTTGCTGACATGTGCCATGTTCCTAGTGAATTGGTAACACCTTTGGCAATGGAATCTGACTATTTTTCTATAGTATACGATGAAGATCTTTGGAGTTGA 930 0.3624 MARTPSCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNFTQDEEELIIKMHKKMGNKWSTIAAELPGRTDNEVKNHWHTSLKKRAEDNTKTNQETQTSKSKDINMESTQEQDIVFFHVTPTSSQFSDTTSPLSPFSSSSEVSSIDQSNENLVLEDEFGFLENVDESFWKDPYLDNISNTQSGIVQGDTTNNCAYQNQDTMIHEDAFLVSPNHSSNESLFMDNNDLFGSFLESYRESTVDSFWTHPFVADMCHVPSELVTPLAMESDYFSIVYDEDLWS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03201 309 CDD SANT 69 112 IPR001005 -
Car06g03201 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car06g03201 309 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Car06g03201 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car06g03201 309 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 252 - -
Car06g03201 309 CDD SANT 16 61 IPR001005 -
Car06g03201 309 Gene3D - 68 142 - -
Car06g03201 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car06g03201 309 SMART sant 13 63 IPR001005 -
Car06g03201 309 SMART sant 66 114 IPR001005 -
Car06g03201 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car06g03201 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car06g03201 309 MobiDBLite consensus disorder prediction 111 135 - -
Car06g03201 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car06g03201 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Car06g03201 309 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03201 Car-Chr6 59070339 59071987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03201 1 201 MYB Transcription Factor Family AT2G31180 50.000 2.08e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g03201 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03201 K09422 - gmx:100777107 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03201 06 59070339 59071987 Car06g03201 06 59070339 59071987 ECH