Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03200 ATGGTAAGAGCCCCTTTCTATGACAAAAATGGTCTCAAAAAAGGTGAATGGAGTAGAGAAGAGGATGAGAAGTTAAGTGCTTACATTCAGAAACATGGTCATTCTAATTGGCGTCAACTCCCAAAACAAGCAGATTTAAAGAGGTGTGGAAAAAGTTGCAGACTTCGATGGTTGAATTATTTAAGACCAAATCTTAAACATGGGAGTTACTCAAGTGAAGAAGAAGAAATGATCATCAAATTACACCACCGACATGGaaataaATGGTCTTTGATTGCTGAAAAGTTGCCTGGAAGAACAGACCATGAGATAAAGAATTATTGGCATAGCTACCTAAAAAAAAGTTCAAAGATCAACGAGATCAAATTTTCTGATCAATTGAATCAAATGTCATGTGATAGTAATGTTGAAGAAAATATTGAAACTAATAATTTTGAAACACCTGAAACCCCAAGTTCTAATGCTGGTAAAGATTGTCTTTATATTTTAGAAAGCTCAACAATATTACCTATGTCCACAGAAACATCAACAGGAGACAACTATTTGCCTACCTTAGAGAACTGTCCAAGAACAGAGGAAGATGATGTTGCTCCATGGTTAACTTTTGAAGAATTTAGCGGCGATTTTTGGACAGAACCATGCATCTTAGAAGATACATACATCACTAATAATGAGATATCTAACGACGAAATAGACATAGACTTGTTTCTTCAAGACTTCTTTGATTGTTCTTATTCTTATGCGTTTTAA 750 0.3453 MVRAPFYDKNGLKKGEWSREEDEKLSAYIQKHGHSNWRQLPKQADLKRCGKSCRLRWLNYLRPNLKHGSYSSEEEEMIIKLHHRHGNKWSLIAEKLPGRTDHEIKNYWHSYLKKSSKINEIKFSDQLNQMSCDSNVEENIETNNFETPETPSSNAGKDCLYILESSTILPMSTETSTGDNYLPTLENCPRTEEDDVAPWLTFEEFSGDFWTEPCILEDTYITNNEISNDEIDIDLFLQDFFDCSYSYAF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03200 249 CDD SANT 69 112 IPR001005 -
Car06g03200 249 Gene3D - 13 66 - -
Car06g03200 249 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 219 - -
Car06g03200 249 CDD SANT 16 61 IPR001005 -
Car06g03200 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car06g03200 249 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car06g03200 249 Gene3D - 69 115 - -
Car06g03200 249 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car06g03200 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car06g03200 249 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Car06g03200 249 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car06g03200 249 SMART sant 13 63 IPR001005 -
Car06g03200 249 SMART sant 66 114 IPR001005 -
Car06g03200 249 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car06g03200 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03200 Car-Chr6 58954878 58956936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03200 1 180 MYB Transcription Factor Family AT5G16770 46.448 1.52e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g03200 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03200 K09422 - gmx:100782270 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03200 06 58954878 58956936 Car06g03200 06 58954878 58956936 ECH