Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03189 ATGTTGGATCCTCGAAAAATATCCACATCTAAAGTCAAACAAAGGCCTCGTCCCTTGAAAGATTCAAATATTATGTCGAGAAAATTGCGCATAATTTATGATGATCCTGATGCAACTGATTCATCCGAAGATGAGTTAAAGTCTAAAAGAATAAAGAGAAGTTTCATAGACATCCCTCTTCCATTTGTATCTACGTCTTTCTCCTCTGAAAATAGCTTCTACGAAAAATCAAATATTACAAAGAAGAATTGTCTAACGCAACCTAAAAAAAAGAAGGTACTTCCAGCAACAATTTCAACACCAATCCCAACAAGGAGACAATCTTCTCCGAAATATCGAGGTGTTCGCATGAGAAAGTGGGGAAAATGGGCGGCTGAAATTCGTATTCCAACAACCACCACTCGAATTTGGTTAGGAACTTTCAACACTCCTGAAGAGGCTTCTCAAGCCTATGAAGCCAAACGACTTCAATTAGAACTTGAAGCAAAATCAAAGGCTAAAGAATGCATCAATGTTAATGGTGATGGTTCTTCTACTCTTGAAAATAACAAGAGTAATTACTTAAACTCTTCTACTGCAGACTCTGAGAGCTTACTCTCACACACATCACCTTCTTCTGTGCTTGAGTTGAATACACCAACTTCCAATTTGATTGAGAAGCTTGATGTTTCATCAAACAATGAAGTCATTGAAAAAGATGCTGAAGAGGCCTGTGATTTTGTAGCTTATCTACTAGAAGAGCTAGAAATACCAGATCTTGGAGTTTTGGAATTTCCTGAACCATCTGTTACTCCTGAGGCTCTAGCGGATCCCAACCTTGGGTTTGGATTTGATTTTGGAAAGGTTCATGACTATGGACATGGTTTTGACGAACTTGGTGACTTCAACGATATCCACATTCATGGGTTTGATGACAATGAGCCTAGCGAGCTTCCGGATTATGATTTTGACGATGATGATGAATTTTCTGGTTGGATTGAAAGAACCCCATTCTATCATTTAAGAATATAG 1011 0.3818 MLDPRKISTSKVKQRPRPLKDSNIMSRKLRIIYDDPDATDSSEDELKSKRIKRSFIDIPLPFVSTSFSSENSFYEKSNITKKNCLTQPKKKKVLPATISTPIPTRRQSSPKYRGVRMRKWGKWAAEIRIPTTTTRIWLGTFNTPEEASQAYEAKRLQLELEAKSKAKECINVNGDGSSTLENNKSNYLNSSTADSESLLSHTSPSSVLELNTPTSNLIEKLDVSSNNEVIEKDAEEACDFVAYLLEELEIPDLGVLEFPEPSVTPEALADPNLGFGFDFGKVHDYGHGFDELGDFNDIHIHGFDDNEPSELPDYDFDDDDEFSGWIERTPFYHLRI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03189 336 MobiDBLite consensus disorder prediction 1 24 - -
Car06g03189 336 ProSiteProfiles AP2/ERF domain profile. 111 173 IPR001471 GO:0003700|GO:0006355
Car06g03189 336 CDD AP2 110 153 IPR001471 GO:0003700|GO:0006355
Car06g03189 336 SMART rav1_2 111 167 IPR001471 GO:0003700|GO:0006355
Car06g03189 336 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Car06g03189 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 9 315 - -
Car06g03189 336 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 315 - -
Car06g03189 336 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Car06g03189 336 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Car06g03189 336 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Car06g03189 336 SUPERFAMILY DNA-binding domain 111 158 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03189 Car-Chr6 58788929 58789939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03189 5 318 AP2-EREBP Transcription Factor Family AT1G68550 32.198 1.33e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g03189 AP2 6.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03189 - - mtr:MTR_1g105400 286.96