Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03187 ATGCAGAATATTGAAGAGAAGCCACATATGCCTTCATCTTCTTTCCGAAGGCGCACTGTCTATCCAGAAACCTTCTCTTTTCCGGACACTGATCCTGACATTTTCACAGCATGCTCTCTTGGAACTGCAGCGCACCCTCGCCATATCAGAGATCCTTCTTCTGATGATTTTTCTGAGATAATGGTGCTTCAAGGAAGCATACTAATGGGAGGACGGCGTGACCTTTTCCGAGACTGGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGCGAGAGAATTGGTAATGTCAATACAGGACTTAAAGAAGATGAGATGGAACCTTACATAACGAAGACTAAGCTTCAGATTTCGGATCAAGTAGACAAAAAGTGCAGCATTTGTCAGGAAGAGTATGAAGAAGATGATAAACTTGGGAGGCTTAACTGTGATCACTTGTATCACTTTCAATGTATACAACAATGGGTTGCACACAAAAATTGCTGCCCTGTGTGTAAGCACCAGGTTGCAGCACGACGCTGA 534 0.4326 MQNIEEKPHMPSSSFRRRTVYPETFSFPDTDPDIFTACSLGTAAHPRHIRDPSSDDFSEIMVLQGSILMGGRRDLFRDWRLDVDNMSYEQLLELGERIGNVNTGLKEDEMEPYITKTKLQISDQVDKKCSICQEEYEEDDKLGRLNCDHLYHFQCIQQWVAHKNCCPVCKHQVAARR 177
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car06g03187 177 ProSiteProfiles Zinc finger RING-type profile. 129 170 IPR001841 -
Car06g03187 177 SUPERFAMILY RING/U-box 110 174 - -
Car06g03187 177 Pfam Ring finger domain 128 170 IPR001841 -
Car06g03187 177 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 11 176 - -
Car06g03187 177 SMART ring_2 129 169 IPR001841 -
Car06g03187 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 175 IPR013083 -
Car06g03187 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 176 IPR045191 GO:0061630
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Car06g03187 Car-Chr6 58745017 58747567 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03187 61 172 C3H Transcription Factor Family AT2G15530 47.899 1.35e-27 106
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03187 - - cam:101488798 355.525