Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03161 ATGGAGACTGTTCTTTCCAAACACTCACCACCTTCTGCCTTCAAGGGTTTGAGCAAGGAGGAGGAAGAATCATTGCTTGGACAAATTGAAATATGGAAGTACATGACACAATTCACTGACTCATTTGCTCTCAAAAGTGTTGTGGAACTCCGCATAGCTGACATAATAGACCGCTATGGTAAACCACTATCCTTGACACAAATAGTTCAGAATCTCGACGATGCACCTTCCCCTGATAGCACTCTGCTCCTAAGAATAATGCGAGTTATGGTTCGGAGAAAGATATTCAGCTCTGAAAAATCTGAAACCGGAGAAACTCTTTATGGTTTAACTAGAGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTTGAGAATCATCCATTTCATTTGAACCCTGCTAACTTTATTAGTGACATTATAAGAGAAGGGACAAAAAATGGAACAGCTTTTTTTAGGTGTCATGGTCATGAACAATTTGAAATGACGGGTTTGGACCCAAAATATAATGAATTGTTTAATCAAGGTATGGTTTGTACGGCTAGAATTGTTTCAAGGGCTGTTATTGCTGGATATAAAGATGGATTTAATCAAATTCAATCTTTGGTTGATGTTGGAGGTGGAATTGGTGGATCTCTTTCTGAAATTGTTAGAGCTTACCCTCATATTCAAGGTATTAACTTTGATTTGCCTCATGTTGTTGAGACAGCACCTAAGTTTGATGGTATCACTCATGTTGGAGGAGACATGTTTGTTTCTGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGATTGGAGTGACGATCATTGCATAAAGATTTTGAAGAATTGCAGAAAAGCAATTCCAGAAAAAACAGGAAAAGTCATAATTGTGGACCATGTTTTAGACCCAGAAGGTGATGAACCATTTACTGACACAGGAATCGCGTTTGACATGATGCTTCTTGCACACAATGCTGGTGGTAAAGAAAGAACTGAAGAGAATTGGAAATATCTCTTTAAAGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATCAATTATTGAGGCGTTTCCAATCTAA 1110 0.3829 METVLSKHSPPSAFKGLSKEEEESLLGQIEIWKYMTQFTDSFALKSVVELRIADIIDRYGKPLSLTQIVQNLDDAPSPDSTLLLRIMRVMVRRKIFSSEKSETGETLYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISDIIREGTKNGTAFFRCHGHEQFEMTGLDPKYNELFNQGMVCTARIVSRAVIAGYKDGFNQIQSLVDVGGGIGGSLSEIVRAYPHIQGINFDLPHVVETAPKFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGDEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFKETGFPRYNIIKINALPSIIEAFPI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03161 369 Gene3D Vaccinia Virus protein VP39 119 369 IPR029063 -
Car06g03161 369 Pfam O-methyltransferase domain 145 349 IPR001077 GO:0008171
Car06g03161 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 366 IPR029063 -
Car06g03161 369 Gene3D - 15 117 IPR036388 -
Car06g03161 369 PANTHER O-METHYLTRANSFERASE 20 368 IPR016461 GO:0008168
Car06g03161 369 PIRSF O-mtase 12 369 IPR016461 GO:0008168
Car06g03161 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 368 IPR016461 GO:0008168
Car06g03161 369 SUPERFAMILY "Winged helix" DNA-binding domain 21 120 IPR036390 -
Car06g03161 369 Pfam Dimerisation domain 43 91 IPR012967 GO:0046983
Car06g03161 369 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 20 368 - -
Car06g03161 369 CDD AdoMet_MTases 209 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03161 Car-Chr6 58004176 58010343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03161 42 355 Monolignol Biosynthesis Gene Families AT5G54160 40.938 4.57e-79 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03161 K22588 - gmx:100800801 658.677