Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03156 ATGGCCTTAGATGGATACATCGATGATACCGCGTCTTTTGAAGACCAACCATCTTTAAAAAATTGGAAACCTTCCAAAGATGGCATGACAGATTCTGATAGAAATGCATCTGGTGGATTTGATTGCAACATCTGCCTGGATTGTGTGCAGGATCCGGTTGTCACATTTTGTGGCCATCTTTACTGTTGGCCTTGCATTTACAAATGGCTTCATTTAAAAACCAGTGTCTATTCGGAATACGAAGAACAGCAGAAGCCGCAATGTCCGGTCTGCAAATCAGAACTCTCTCAATCCTCCTTAGTTCCATTATATGGCCGCGGCCAAACTAAGACAACTTCCGAAGAGAAGGTGAACCAAGTAGGGATTGTCGTGCCTCAAAGGCCTTCGGGTCCGAGATCATACAATGCTACAACTGTTTCTCAATCTAGTTATCAAAGTTATCGTCATCCTCAACAATTCAACTCGATTCCTAGCGATCCCTCGCGGATGTTTAGCACGAGTGGTTCGGCACTAGACAATACATATGGAATTTTTGGTGAGATGATATATGCAAGGGTGTTTGGCAATCAGGTGGAAAATATGTATACATATCCTAATTCATATAATTTTCAAGGGAGCAATAATTCAAGGATGAGGAGACATTTAATGCAGGTTGATAAATCACTCAGCAGAATCTGTTTTTTCCTACTTTGCTGCTTAGTTTTGTGTCTTCTCTTATTCTGA 723 0.4122 MALDGYIDDTASFEDQPSLKNWKPSKDGMTDSDRNASGGFDCNICLDCVQDPVVTFCGHLYCWPCIYKWLHLKTSVYSEYEEQQKPQCPVCKSELSQSSLVPLYGRGQTKTTSEEKVNQVGIVVPQRPSGPRSYNATTVSQSSYQSYRHPQQFNSIPSDPSRMFSTSGSALDNTYGIFGEMIYARVFGNQVENMYTYPNSYNFQGSNNSRMRRHLMQVDKSLSRICFFLLCCLVLCLLLF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03156 240 CDD RING-HC_AtRMA_like 40 93 - -
Car06g03156 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 149 IPR013083 -
Car06g03156 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 11 240 - -
Car06g03156 240 SUPERFAMILY RING/U-box 39 104 - -
Car06g03156 240 ProSiteProfiles Zinc finger RING-type profile. 42 92 IPR001841 -
Car06g03156 240 Pfam Zinc finger, C3HC4 type (RING finger) 42 91 IPR018957 GO:0046872
Car06g03156 240 SMART ring_2 42 91 IPR001841 -
Car06g03156 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car06g03156 240 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03156 Car-Chr6 57873997 57877577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03156 35 240 C3H Transcription Factor Family AT4G28270 40.278 6.05e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03156 K10666 - gmx:100785491 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03156 06 57873997 57877577 Car06g03156 06 57873997 57877577 ECH