Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03146 ATGCAGCTCCACCTTGGCTCAAATCTGAGCCTCTTCTGCTTCGGCTTGGCTTTGAAACTCGCGCTGCTGCCGGTGGCGGTTGGACAACTTCAGCATCACTCCCTCGACCTACATTGGTATTCCGGAACCGCCACTTGGTACGGCGACCCCGAAGGAGACGGAAGTACCGGTGGCGCGTGTGGGTATGGTACGTTGGTGGATGTGAAGCCGTTGAGGGCGAGAGTAGGAGCGGTGGGGCCAGTTCTGTTTATGAAAGGTGAAGGATGCGGTGCTTGTTACAAAGTGAAGTGCTTAGACAATAGCATATGTACTAGGCGAGCTGTTACCGTTATAATTACCGACGAGTGCCCCGGCTGCCCCTCTGACCGGACTCATTTTGACCTCAGTGGTGCCGCTTTTGGCCGTATGGCTATCTCCGGCGAGAACGGTCAACTTAGGGACCGCGGTCAAATCCCTGTTATTTACCGAAGAACGCAGTGTAAATACCCGGGGAAGAAAATTGCCTTTCATGTTAACGAAGGTTCGACACCATTTTGGTTATCACTTCTGGTTGAATTTGAAGATGCAGAGGGAGATATTGGTACCATGCATATACGAGAAAATGGTTCAAGTGAGTGGCTGCAGATGAATCATGTGTGGGGTGCAAATTGGTGCATTATTGGAGGACCTTTAAAGGGACCATTCTCTGTTAAACTGAGTTCCTCCACCGGGAGAACCCTTTCTGCTAGAGATGTTATTCCTACCAATTGGGTTTCAAAGGCCACCTACACTTCTCGCCTAAATTTCTACCCTTAG 795 0.5031 MQLHLGSNLSLFCFGLALKLALLPVAVGQLQHHSLDLHWYSGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGPVLFMKGEGCGACYKVKCLDNSICTRRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAISGENGQLRDRGQIPVIYRRTQCKYPGKKIAFHVNEGSTPFWLSLLVEFEDAEGDIGTMHIRENGSSEWLQMNHVWGANWCIIGGPLKGPFSVKLSSSTGRTLSARDVIPTNWVSKATYTSRLNFYP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03146 264 Gene3D - 25 160 IPR036908 -
Car06g03146 264 PANTHER EXPANSIN-LIKE PROTEIN B1 5 264 - -
Car06g03146 264 Pfam Expansin C-terminal domain 167 247 IPR007117 -
Car06g03146 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 165 IPR007112 -
Car06g03146 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Car06g03146 264 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Car06g03146 264 PANTHER EXPANSIN-B3 5 264 - -
Car06g03146 264 SMART dpbb_1 75 155 IPR007112 -
Car06g03146 264 Gene3D - 161 259 IPR036749 -
Car06g03146 264 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Car06g03146 264 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Car06g03146 264 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Car06g03146 264 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Car06g03146 264 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Car06g03146 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Car06g03146 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Car06g03146 264 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Car06g03146 264 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Car06g03146 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Car06g03146 264 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Car06g03146 264 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Car06g03146 264 Pfam Lytic transglycolase 80 154 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03146 Car-Chr6 57522452 57526176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03146 16 201 Expansin Gene Family AT4G28250 69.892 1.02e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03146 K20628 - gmx:100804525 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03146 06 57522452 57526176 Car06g03146 06 57522452 57526176 ECH
Car01g02391 01 49659309 49662299 Car06g03146 06 57522452 57526176 PCT