Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03140 ATGGATGAAGCAATGAACAGTGAAAAATCCACCAAAAACAAAGAGGGTGTTAATGAGACTCCCAATGTGATTGGTGAATTTGAAACTAAAGAATGTGATAAAACATTTTTTGAAGACATTTCCATGCCATATACATATAGGCCTCTCAAGAAGATTTGTAGCCCTCAAAACCAAAACAAAAATCAACCTCCTTCATCTAAAATAATATTTCCTTTTGCTTTTGAAGGTTCTTCTCAACATCCAATTTCATTCCAACACCAATCAACAACAACCACAACCACAAATTTGCTTCCTTTTTCTCCACCTCTTCACCCAACAACACAACATATCATACCTTTTGACCATAAACAGAACACATTTTCAGACCCAAATAAGCTTTTGAGGTCCAAAACACAGCCTTTGAATGCTACAAAACTCTATAGAGGAGTAAGACAACGCCATTGGGGAAAATGGGTCGCTGAGATTCGTCTCCCTCGAAATAGGACTCGTCTTTGGCTCGGAACATTTGATACAGCTGAAGACGCTGCTATGGCATACGACCGCGAAGCTTTTAAGTTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAACcaacatcatcatcatcatcCACAATAGTTCAAATTTCAAGTGCTTCTTTACCACATGAAGGATCAAGTTCAATATCATGCCAGAACACAAACCAACCTAAATTGGTTTCAGAAGAACATAGCATGCAGATTCTAAATGTTTCTGAAACTGGTGAAAGCATATCAAAGCCTAAGGAATTGGTTTTGGAAGAAATGGAAGATTGGTTCAATGCAATTCCTGCAGGTTGGGGTCCAAGTAGCCCTTTGTGGGATGATTTGGATCCTTGTTTGAATCCAAACAAGAAGCAATTTCATGTTATTGGTGATGAAACTAAGAGACAACAAGAAGATAACATAGGACAAGGTTCTTCTTTTAACAGTATTGTCCCTTGA 984 0.372 MDEAMNSEKSTKNKEGVNETPNVIGEFETKECDKTFFEDISMPYTYRPLKKICSPQNQNKNQPPSSKIIFPFAFEGSSQHPISFQHQSTTTTTTNLLPFSPPLHPTTQHIIPFDHKQNTFSDPNKLLRSKTQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKFRGENAKLNFPELFLNKDKPTSSSSSTIVQISSASLPHEGSSSISCQNTNQPKLVSEEHSMQILNVSETGESISKPKELVLEEMEDWFNAIPAGWGPSSPLWDDLDPCLNPNKKQFHVIGDETKRQQEDNIGQGSSFNSIVP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03140 327 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Car06g03140 327 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Car06g03140 327 MobiDBLite consensus disorder prediction 1 15 - -
Car06g03140 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 22 118 - -
Car06g03140 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 120 307 - -
Car06g03140 327 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Car06g03140 327 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Car06g03140 327 MobiDBLite consensus disorder prediction 1 22 - -
Car06g03140 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 22 118 - -
Car06g03140 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 120 307 - -
Car06g03140 327 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Car06g03140 327 Pfam AP2 domain 140 188 IPR001471 GO:0003700|GO:0006355
Car06g03140 327 CDD AP2 138 198 IPR001471 GO:0003700|GO:0006355
Car06g03140 327 Gene3D AP2/ERF domain 139 197 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03140 Car-Chr6 57428759 57429742 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03140 126 289 AP2-EREBP Transcription Factor Family AT2G20880 55.621 2.34e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g03140 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03140 - - cam:101497734 664.07