Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03138 ATGCCATATACATATAGGCCTCTCAAGAAGATTTGTAGCCCTCAAAACCAAAACACAAATCAACCTCCTTCATCTAAAATAATATTTCCTTTTGCTTTTGAAGGTTCTTCTCAACATCCAATTTCATTCCAACACCAATCAACAACAACCACAACCACAAATTTGCTTCCTTTTTCTCCACCTCTTCACCCAACAACACAACATATCATACCTTTTGACCATAAACAGAACACATTTTCAGACCCAAATAAGCTTTTGAGGTCCAAAACACAGCCTTCGAATGCTACAAAACTCTATAGAGGAGTAAGACAACGCCATTGGGGAAAATGGGTCGCTGAGATTCGTCTCCCTCGAAAAAGGACTCGTCTTTGGCTCGGAACATTTGATACAGCTGAAGACGCTGGTATGGCATACGACCGCGAAGCTTTTAAGTTTAGAGGAGAAAATCCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAACcaacatcatcatcatcatcCACAATAGTTCAAATTTCAAGTGCTTCTTTACCACATGAAGGATCAAGTTCAATATCATGCCAGAACACAAACCAACCTAAATTGGTTTCAGAAGAACATAGCATGCAGATTCTAAATGTTTCTGAAACTGGTGAAAGCATATCAAAGCCTAAGGAATTggttttggaagaaatggaagattgcgcttaa 699 0.3605 MPYTYRPLKKICSPQNQNTNQPPSSKIIFPFAFEGSSQHPISFQHQSTTTTTTNLLPFSPPLHPTTQHIIPFDHKQNTFSDPNKLLRSKTQPSNATKLYRGVRQRHWGKWVAEIRLPRKRTRLWLGTFDTAEDAGMAYDREAFKFRGENPKLNFPELFLNKDKPTSSSSSTIVQISSASLPHEGSSSISCQNTNQPKLVSEEHSMQILNVSETGESISKPKELVLEEMEDCA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03138 232 MobiDBLite consensus disorder prediction 10 25 - -
Car06g03138 232 CDD AP2 97 157 IPR001471 GO:0003700|GO:0006355
Car06g03138 232 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Car06g03138 232 Pfam AP2 domain 99 147 IPR001471 GO:0003700|GO:0006355
Car06g03138 232 Gene3D AP2/ERF domain 98 156 IPR036955 GO:0003700|GO:0006355
Car06g03138 232 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Car06g03138 232 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Car06g03138 232 MobiDBLite consensus disorder prediction 211 232 - -
Car06g03138 232 MobiDBLite consensus disorder prediction 1 25 - -
Car06g03138 232 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Car06g03138 232 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Car06g03138 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 77 - -
Car06g03138 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 79 210 - -
Car06g03138 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 5 77 - -
Car06g03138 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 79 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03138 Car-Chr6 57255266 57256124 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03138 85 165 AP2-EREBP Transcription Factor Family AT2G20880 80.247 1.49e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car06g03138 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03138 - - cam:101502122 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03138 06 57255266 57256124 Car06g03138 06 57255266 57256124 ECH