Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03115 ATGACAATCATCATGGGAAAGATATTGCTAACACTATTATTGCTATCATCAATTTTCTCAATAGCAACTTCATCAAAAAGAAAATCAAAATCTTCAAACAACAACAACATAGATTGGTGGTGTAACCAAACCCCACACCCCGAAGCATGCAAATTCTacacaaaacaaacacattacaatgacaacaaaaacatcaaacacaaatcaaaGTTCCGTGAAATTCTTATCCATTTAGCCTTAGAGAGAGCCGTTATAATGCGAAACATAGCACGTGACTTAGGACAAAACAACTGGTTAACAACCAAGAAGAAAAAATCCGTGTCACGTGACTGTTTAAAACTCTACGACAACACCGTTTTTCATCTGAACAGAACATTTCATAATCTTCACATCAAAAAAACTTGTTCATCATTCGACGCACAAACATGGCTCAGCACTGCTTATACAAACATCGAAACATGTCGAAACGGAGCGTTAGAATTAAACATTCCAGATTTCGTTTTACCAATCATGAAGAAAAACATGACAGAGATTATTAGCAATGGTTTGTTCGTCAATTGGGAATTTGTTAAACACGAAAATGTTCATCACACCGACGACGACATCAAAGAAGCTTTTCCGAGATGGTTGTCGACTCGAGAGAGGAGACTATTGGAATCTTCGAGTTTAAAGGCGCATTTAGTTGTGGCGAAAGACGGTTCAGGGCATTTTAAGAGTATTCAAAGTGCTATTAATGCTGCTGGGAAGAGAAGGGTTAAAACGAGATTTGTTATACGTGTGAAGAGAGGTGTTTATAGAGAGAATATTTTGATTGGAAAAATGAATGATAATATAATGTTGGTTGGTGATGGAATGAGGTTTACCATTATTACAAGTGATAGAAATGTTCAAGCTGGTTTTACAACCTATAGTTCTGCCACTGCAGGAATAGATGGACTTCACTTTATTGCACGTGACATTACTTTTGAAAATACGGCGGGACCTCGAAGGGGTCAAGCAGTGGCACTTCGATCAGCATCAGATCTCTCTGTATTCTATCGTTGCGCGTTTAAAGGGTATCAAGACACTCTCATGGTTCATGCACAACGTCAATTTTATAGAGAATGTTATATCTATGGGACTGTTGATTTCATCTTTGGCAATGCAGCGGTAGTTTTTCAAAATTGCATGATTTTAGTTAGAAGACCTTTAAATGGACAAGCAAACATGATCACAGCGCAAGGTAGAGATGACCCATTTCAGAACACGGGAATTTCAATTCAGAATTCACAAATTAGAGCAGCTCCAGACTTCAAACCGGTTGTTTCGAAATTCAATACTTTTATTGGTCGGCCATGGCAAAGATACTCTAGAGTTGTGGTTATGAAATCTTTCATGGATAACTTGGTGAGTCCATTGGGTTGGTCTCCATGGGGAGGTACTAATTTTGCTCAAAATACTCTATTTTATGGAGAGTATAAAAATTTTGGGCCTGGCTCATCAACAAGAAACAGAGTAAGATGGCCTGGTTATCATGTTATGAATAGCCCAACTCAGGCATCACAATTCACTGTTGCTAATCTCCTTGCTGGTGGTTCATGGTTACCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTAA 1620 0.3753 MTIIMGKILLTLLLLSSIFSIATSSKRKSKSSNNNNIDWWCNQTPHPEACKFYTKQTHYNDNKNIKHKSKFREILIHLALERAVIMRNIARDLGQNNWLTTKKKKSVSRDCLKLYDNTVFHLNRTFHNLHIKKTCSSFDAQTWLSTAYTNIETCRNGALELNIPDFVLPIMKKNMTEIISNGLFVNWEFVKHENVHHTDDDIKEAFPRWLSTRERRLLESSSLKAHLVVAKDGSGHFKSIQSAINAAGKRRVKTRFVIRVKRGVYRENILIGKMNDNIMLVGDGMRFTIITSDRNVQAGFTTYSSATAGIDGLHFIARDITFENTAGPRRGQAVALRSASDLSVFYRCAFKGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCMILVRRPLNGQANMITAQGRDDPFQNTGISIQNSQIRAAPDFKPVVSKFNTFIGRPWQRYSRVVVMKSFMDNLVSPLGWSPWGGTNFAQNTLFYGEYKNFGPGSSTRNRVRWPGYHVMNSPTQASQFTVANLLAGGSWLPATGVPFTSGL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03115 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 184 IPR006501 GO:0004857
Car06g03115 539 Gene3D - 220 539 IPR012334 -
Car06g03115 539 SMART PMEI_2 32 185 IPR006501 GO:0004857
Car06g03115 539 PANTHER PECTINESTERASE 8 538 - -
Car06g03115 539 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 8 538 - -
Car06g03115 539 SUPERFAMILY Pectin lyase-like 223 538 IPR011050 -
Car06g03115 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 185 IPR035513 -
Car06g03115 539 Pfam Pectinesterase 227 524 IPR000070 GO:0030599|GO:0042545
Car06g03115 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 187 IPR035513 -
Car06g03115 539 CDD PMEI-like_3 39 186 - -
Car06g03115 539 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Car06g03115 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03115 Car-Chr6 56403638 56405781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03115 32 539 Carbohydrate Esterase AT3G47400 59.615 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03115 K01051 - gmx:100807908 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03115 06 56403638 56405781 Car06g03115 06 56403638 56405781 ECH