Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03112 ATGGCTCGTGGAAAGGTTCAGTTGAAACGAATTGAGAATCCGGTGCATAGACAAGTAACCTTTTGTAAGCGTCGAGCAGGGCTTTTGAAGAAGGCTAAGGAGCTTTCTGTGCTTTGTGATGCTGAAATTGGTCTCGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGGACCATGCAAGGGTTAATAGAGAAATACTTGAAGTTTACACGAGGGACTCAATCTGAAGCTATCACTGAACCACGTCCTCTGGATGCTAAAGAGGAAACCGATGTGCTAAAACAAGAAATCGAAACATTGCAAAAGGGTATCAGGTATTTGTTTGGAGGGGGATTAGGGACACTGAAAATGGATGAATTACAAGTTCTAGAGAAGAATCTTGAAAACTGGATGTATCATGTTCGCACAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTCTCAGAGATAAGGTTTTGGAGAATACTTCAGTCACCAACTTTGTTCCATTTGCTACTGATACTTCGTACCCTCTAATTATACAAGATGGGATTTTTCAACTCTAG 561 0.41 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIEKYLKFTRGTQSEAITEPRPLDAKEETDVLKQEIETLQKGIRYLFGGGLGTLKMDELQVLEKNLENWMYHVRTMKMNIMLQEIQALRDKVLENTSVTNFVPFATDTSYPLIIQDGIFQL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03112 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Car06g03112 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car06g03112 186 Pfam K-box region 90 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g03112 186 ProSiteProfiles K-box domain profile. 87 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g03112 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 185 - -
Car06g03112 186 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Car06g03112 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car06g03112 186 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Car06g03112 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 - -
Car06g03112 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car06g03112 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car06g03112 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car06g03112 186 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Car06g03112 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03112 Car-Chr6 56087235 56095411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03112 1 186 MADS-box Gene Family AT1G71692 58.768 1.52e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car06g03112 K-box 9.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03112 - - gmx:100783345 294.278