Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g03112 | ATGGCTCGTGGAAAGGTTCAGTTGAAACGAATTGAGAATCCGGTGCATAGACAAGTAACCTTTTGTAAGCGTCGAGCAGGGCTTTTGAAGAAGGCTAAGGAGCTTTCTGTGCTTTGTGATGCTGAAATTGGTCTCGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGGACCATGCAAGGGTTAATAGAGAAATACTTGAAGTTTACACGAGGGACTCAATCTGAAGCTATCACTGAACCACGTCCTCTGGATGCTAAAGAGGAAACCGATGTGCTAAAACAAGAAATCGAAACATTGCAAAAGGGTATCAGGTATTTGTTTGGAGGGGGATTAGGGACACTGAAAATGGATGAATTACAAGTTCTAGAGAAGAATCTTGAAAACTGGATGTATCATGTTCGCACAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTCTCAGAGATAAGGTTTTGGAGAATACTTCAGTCACCAACTTTGTTCCATTTGCTACTGATACTTCGTACCCTCTAATTATACAAGATGGGATTTTTCAACTCTAG | 561 | 0.41 | MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIEKYLKFTRGTQSEAITEPRPLDAKEETDVLKQEIETLQKGIRYLFGGGLGTLKMDELQVLEKNLENWMYHVRTMKMNIMLQEIQALRDKVLENTSVTNFVPFATDTSYPLIIQDGIFQL | 186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g03112 | 186 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 56 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | Pfam | K-box region | 90 | 158 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Car06g03112 | 186 | ProSiteProfiles | K-box domain profile. | 87 | 186 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Car06g03112 | 186 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 | 1 | 185 | - | - | |
Car06g03112 | 186 | CDD | MADS_MEF2_like | 2 | 79 | IPR033896 | GO:0000977|GO:0045944 | |
Car06g03112 | 186 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | Gene3D | - | 15 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 185 | - | - | |
Car06g03112 | 186 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | SUPERFAMILY | SRF-like | 1 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Car06g03112 | 186 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car06g03112 | Car-Chr6 | 56087235 | 56095411 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car06g03112 | 1 | 186 | MADS-box Gene Family | AT1G71692 | 58.768 | 1.52e-73 | 219 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Car06g03112 | K-box | 9.2e-18 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g03112 | - | - | gmx:100783345 | 294.278 |