Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03111 ATGGACATGAATTCAAATAACACTCCTGTTCTCACGGATACCGCTTCGATAACAAATTCAAGGCTGCACGTGCGTTCCAGTTTGTTGCCTTATTCCCATACCGGTGCCACCTTTCCACACGGTATGCTATTGACTATCCCAAGGAAGATGACGGGAATTCTCGAAGATGTTCGTTCTTGTGGTTGGTTGGATGCCATGAAATCGTCTTCACCTCCGCCGAGGAATTTAACAAAGGATGTTAATCACGGGTCTGCATCACCTGAAGCCGATAATACTTATTTTAACTGGCTGCTAAAATATCCATCGGCTCTAACATCTTTTGATCAAATTACAAACTATGCGAAAGGCAAAAGAATTGCACTGTTTTTGGACTATGACGGAACTCTTTCACCAATTGTGGATAATCCTGACTGCGCTTTCATGTCGGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAGTATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGCGACAAGGTACATGAATTTGTAGGACTAACGGAACTCTACTATGCCGGTAGCCATGGAATGGATATCATTGGCCCTGTTAGACAATCTGTATCTGCATCTCATAACCACCCTAATTGCATCATTAAGTCTACAGACAAGCAGGGGAAGAAGGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTAATGAGGTACTTAAGTCTCTTATTGAGTGTACAAAAGACATCAAAGGAGCAAAAATCGAGAACAATAAATTTTGTGTATCTGTACATTACCGCAATGTAGATGAGAAGAGTTGGGATTTGGTGGGGCAACGAGTTAATGATGTTCTTAAGAGTTTTCCACGTTTGCGGTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGACCCGTTATTAACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTTAACAATTGTGATGATGTGCTTCCTATATATATTGGCGATGATCGAACGGATGAAGATGCATTTAAGGTTTTGAGAGAGGGAAGTAAAGGTTATGGGATTTTAGTGTCTTCAGCACCAAAGGAAAGCAATGCAATTTACTCTCTTCGTGATCCGTTGGAGGTCATGGAATTTCTTAAGTCACTTGTGGTATGGAAGTCAAATCCCTTAAAAAGCCATATATAG 1173 0.4118 MDMNSNNTPVLTDTASITNSRLHVRSSLLPYSHTGATFPHGMLLTIPRKMTGILEDVRSCGWLDAMKSSSPPPRNLTKDVNHGSASPEADNTYFNWLLKYPSALTSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSVSASHNHPNCIIKSTDKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGAKIENNKFCVSVHYRNVDEKSWDLVGQRVNDVLKSFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGSKGYGILVSSAPKESNAIYSLRDPLEVMEFLKSLVVWKSNPLKSHI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03111 390 CDD HAD_TPP 120 373 - -
Car06g03111 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Car06g03111 390 SUPERFAMILY HAD-like 120 381 IPR036412 -
Car06g03111 390 Gene3D - 222 389 IPR023214 -
Car06g03111 390 Gene3D - 119 210 IPR023214 -
Car06g03111 390 Pfam Trehalose-phosphatase 122 368 IPR003337 GO:0003824|GO:0005992
Car06g03111 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Car06g03111 390 TIGRFAM T6PP: trehalose-phosphatase 219 379 IPR003337 GO:0003824|GO:0005992
Car06g03111 390 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 121 343 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03111 Car-Chr6 56027716 56033344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03111 113 378 Trehalose Biosynthesis Gene Families AT1G70290 26.502 1.87e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03111 K01087 - gmx:100819495 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03111 06 56027716 56033344 Car06g03111 06 56027716 56033344 ECH