Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03106 ATGGAAGCTCTCGATTCGAACCCTCCCAACGATCTACCACCACAACCCGATTCAACATCAGACTATCAAAACCAATCCCAAGCCCTAATCCCCCAAAACGGCACCAATGGAAACCCATCGGAGAACGGCCAACTCGCCGCCGATACCGGTTCGCGGCCACATATTACAAAACCACTTCTATCCGAGAATGGTCTGACTGGTAATACCCGAAGCGGCACCACCGACAAGGATCAATCAGGCGGCGAAGAAGAGACAACAAGCAAACGCCGCCGTCGAAGTCGATGGGACCCACAGCCAGATTCAAACGATCAGGCTGGAGGCGAATTAGGCGCCGGAACGAAGAAAAGGAAGTCGCGATGGGCAGACGATGAGCCGAAACCGGTAATTCAACTTCCTGATTTCATGGGCGGTATTGAATTCGATCCCGAAATTCAAGCTTTGAATAGTAGATTACTTGAGATTAGTAGAATGTTACAATCTGGTTTACCTTTAGATGATCGTCCTGAAGGTGCTAGATCTCCCTCACCTGAACCTATATATGACAATATGGGTATTAGAATTAACACTAGAGAGTATCGTGCTCGTGAGAGATTACAAAAAGAGAGACAAGAAATTATATCTCAGATTATTAAGAAAAACCCTGCATTTAAGCCACCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATACCCTGGTTATAATTTCATAGGGCTTATTATTGGTCCTAGGGGTAATACTCAGAAACGTATGGAGAAAGAAACTGGTGCTAAGATTGTGATTCGAGGTAAAGGGTCGGTGAAAGAAGGTAGGTTGCAACAGAAGAGGGACTTGAAACCTGATCCTTCGGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGATACCGCTGATGCGCTTGAAGCTGCTGCTGGTATGGTAGAGAAGCTTTTGCAGCCTGTGGATGAGGTCTTGAATGAGCATAAGAGGCAACAGCTTAGGGAGCTTGCAGCTTTGAATGGGACTATTAGGGATGAAGAGTATTGTAGGTTGTGTGGGGAACCTGGTCATCGCCAATATGCGTGTCCTACGAGGACTTCGACTTTTAAGAGTGAAGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGTATAGATTGTCCGGTGAAAGGTGCTACGGGGAAGAAGATGGATGATGAGTATCAGAATTTCTTGGCTGAGTTAGGTGGTACGGTTCCTGAATCTGCAATAAAGCAAACCAGTACTTTGGCAATTGGGTCGGGCAATTCTGGAAGCAATCCACCTTGGGCTAACAATTCTGGTTCGGCTGGTAGTACACCACAAGCTGGCTTAGGGGTTGGTGCAGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGAGGATGATGGCTTGATCCAATTGTTTCAACAATTTGGTGAGATTGTCATGGCGAAAGTTATTAAGGATCGACTGACAGGTTTGAGTAAAGGATATGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCGATTGTGGCCATGAATGGTTATCGCCTCGAGGGCCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCGCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCTTCTGCTGTGCCGACTTATCCTGTTCCAAATCAGCAAATGGGTGCCTATCCATCCCAACAGTATACTGGTGGTGGTCCCCTTGGAAGTGCTCCTCCTGGGAGTTACGGTGGTACCCCAGTTCCATGGGGACCTCCTGTTCCTCCTCCATACAATCCATATGCTCCTCCTCCACCTGGGTCAACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCATTATGGTGTTCAATATCCTCCTCCAATCCATACGGGTCCTCCCGGTGCTACGTCCCAGCCCATGAATTCTAGTGAAATGCAGCAGAATTATCCTCCTGGAGTGCAGTCTGATAATAATACATCTTCTCAGTCTGTACCGGGCAACATGTATGGGAACACAGTACCATCAATGCCGCCAGCAGCTCCACCAACATATCCTGCATCTTACGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCCCCATCGGCCCCTGCAACTTCAGACCAATCCCACAGCATTGCAAATGCGCCTTGGGCTAGTAATCATCCTGTCCCACCTCCTGCTGCTGACAAGACAACATATGGTGCCGATCAATCCCAGAGCATTGGAAATGTGCCTCCTCCTAACTCATCAGCAGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2352 0.4711 MEALDSNPPNDLPPQPDSTSDYQNQSQALIPQNGTNGNPSENGQLAADTGSRPHITKPLLSENGLTGNTRSGTTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQAGGELGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQTSTLAIGSGNSGSNPPWANNSGSAGSTPQAGLGVGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRLTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPNQQMGAYPSQQYTGGGPLGSAPPGSYGGTPVPWGPPVPPPYNPYAPPPPGSTMYPPMQGQPMPHYGVQYPPPIHTGPPGATSQPMNSSEMQQNYPPGVQSDNNTSSQSVPGNMYGNTVPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPSAPATSDQSHSIANAPWASNHPVPPPAADKTTYGADQSQSIGNVPPPNSSAEKTSYGADSEYEKFMAEMK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03106 783 MobiDBLite consensus disorder prediction 745 769 - -
Car06g03106 783 SUPERFAMILY RNA-binding domain, RBD 460 553 IPR035979 GO:0003676
Car06g03106 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 535 IPR000504 GO:0003723
Car06g03106 783 MobiDBLite consensus disorder prediction 16 49 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 61 75 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 425 446 - -
Car06g03106 783 PANTHER RNA-BINDING PROTEIN RELATED 39 783 IPR045071 -
Car06g03106 783 Gene3D - 141 218 - -
Car06g03106 783 ProSiteProfiles Zinc finger CCHC-type profile. 349 363 IPR001878 GO:0003676|GO:0008270
Car06g03106 783 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Car06g03106 783 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 227 353 IPR036612 GO:0003723
Car06g03106 783 MobiDBLite consensus disorder prediction 642 678 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 110 126 - -
Car06g03106 783 SMART rrm1_1 465 538 IPR000504 GO:0003723
Car06g03106 783 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 39 783 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 683 717 - -
Car06g03106 783 Pfam KH domain 242 290 IPR004088 GO:0003723
Car06g03106 783 Gene3D - 348 400 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 566 594 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 272 292 - -
Car06g03106 783 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Car06g03106 783 SMART c2hcfinal6 374 390 IPR001878 GO:0003676|GO:0008270
Car06g03106 783 Gene3D - 438 546 IPR012677 -
Car06g03106 783 SMART kh_6 227 319 IPR004087 GO:0003676
Car06g03106 783 Pfam Splicing factor 1 helix-hairpin domain 116 223 IPR032570 -
Car06g03106 783 MobiDBLite consensus disorder prediction 615 773 - -
Car06g03106 783 CDD SF1_like-KH 228 344 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 163 182 - -
Car06g03106 783 MobiDBLite consensus disorder prediction 76 98 - -
Car06g03106 783 SUPERFAMILY Retrovirus zinc finger-like domains 345 391 IPR036875 GO:0003676|GO:0008270
Car06g03106 783 MobiDBLite consensus disorder prediction 1 128 - -
Car06g03106 783 Gene3D K Homology domain, type 1 219 347 IPR036612 GO:0003723
Car06g03106 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 542 IPR000504 GO:0003723
Car06g03106 783 ProSiteProfiles Type-1 KH domain profile. 242 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03106 Car-Chr6 55919924 55924136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03106 464 671 Eukaryotic Initiation Factors Gene Family AT3G16380 25.463 8.71e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03106 K13095 - gmx:100800982 1170.61