Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03098 ATGGAGAAGAACAAAGGCAGAGACTGTGGGATTTGTGGTAAGTTTTTCTCCAGTGGGAAAGCCATCGGAGGCCACATGAAATCTCACTTAGTCATACTGCCGATTCCTCCAAAGCCTGAAACTATGAATCAAGCACTAGACAATTCAGCCGATTTAACCCAGCCTCCAATTCAACCCACTTCCTCACTAACTAGCCTTCCCGAAAAGAAACAAACACATGATTTCCGATCTATGAAACGCAACTTCTTTACCTTCTCTGCAAACTCAAACAGAGAAAATGAATTTGTGTTCATCCCTAAAATCCCAACCCGCAAAAGATCCAAATACTGCAGCAAACTTAATGCAGTAGACAATACAAAAACTCAGCTAGAACAAACAAAATCAATACTTGACCCTGTTGCACTAGTAATTGCTGAGATTTTGAGTACGATTAAAAGCAAAGAGAGGAACAAACAAATCATAAATGAAACCAACAAAATGAAGGCAAAAGACAGTGCAGGCAGTAACGATGACTCCCTTGTTCAAGCACACTCTCGAGCAAGGTTCATATGTGATATGTGCGGAAAAATGTTCGGATCGTATCAAGCTCTTGGGGGGCACAAAGCAAACCATAAGAAAACTAAGAATCCATCGCAAGAAGGTGGTTACTCTGATGATGAAAAAAGTGACAACAATGGTGATTTTACAGATCAGAAACTTTTTCAGTGCCCATATTGCTACAGAGCGTTCAAGTCTGCCAAAGCGGTCGGTGGACACAAGAAGGTACACTTTCCCAATACTATGGTTGCTAATGCTCGTACCAGTGCTATTGATTTTCTAGGTGTTCGGTAG 831 0.4128 MEKNKGRDCGICGKFFSSGKAIGGHMKSHLVILPIPPKPETMNQALDNSADLTQPPIQPTSSLTSLPEKKQTHDFRSMKRNFFTFSANSNRENEFVFIPKIPTRKRSKYCSKLNAVDNTKTQLEQTKSILDPVALVIAEILSTIKSKERNKQIINETNKMKAKDSAGSNDDSLVQAHSRARFICDMCGKMFGSYQALGGHKANHKKTKNPSQEGGYSDDEKSDNNGDFTDQKLFQCPYCYRAFKSAKAVGGHKKVHFPNTMVANARTSAIDFLGVR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03098 276 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Car06g03098 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Car06g03098 276 MobiDBLite consensus disorder prediction 199 226 - -
Car06g03098 276 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Car06g03098 276 Pfam C2H2-type zinc finger 9 29 - -
Car06g03098 276 Pfam C2H2-type zinc finger 181 206 - -
Car06g03098 276 Pfam C2H2-type zinc finger 234 256 - -
Car06g03098 276 Gene3D Classic Zinc Finger 154 259 - -
Car06g03098 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Car06g03098 276 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 271 - -
Car06g03098 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Car06g03098 276 MobiDBLite consensus disorder prediction 206 226 - -
Car06g03098 276 SUPERFAMILY beta-beta-alpha zinc fingers 182 256 IPR036236 -
Car06g03098 276 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 271 IPR044303 GO:0006355
Car06g03098 276 SMART c2h2final6 234 256 IPR013087 -
Car06g03098 276 SMART c2h2final6 182 204 IPR013087 -
Car06g03098 276 SMART c2h2final6 7 29 IPR013087 -
Car06g03098 276 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03098 Car-Chr6 55707934 55708986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03098 9 256 C2H2 Transcription Factor Family AT1G02030 28.854 2.53e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g03098 zf-C2H2_6 6.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03098 - - cam:101511854 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03098 06 55707934 55708986 Car06g03098 06 55707934 55708986 ECH