Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03097 ATGAAGCGTGCAAGAGACTCTAGCTCTTCTAGGGTTTCGCCAAGTCTTGAAGCAGGAATCATCAAGAAACTTCGGTTGGAGAATTTCATGTGCCATTCGAATCACGAAACTGAGTTCGGAAACCACGTTAATGTCATCACTGGACAGAATGGAAGTGGTAAAAGTGCAATACTTACAGCATTGTGTGTTGCATTTGGTTGCCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTCATTAAAACTGGTTCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTGATGTTATCATTGTAGAACGAAGGATATCTGAATCCACAAGTTCTATTACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGCAGATCTTCAAGAAATCATTGAACATTTCAACATTGATGTGGAGAATCCATGTGTGATTATGAGTCAAGACAAAAGTAGAGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCGTTGAAATAACTAATGCACGTAGAATAGTTGAAGAGTTAGAGACTGCAATAAGACCTATAGAGAAAGAGCTTAATGAGCTGCAGATTAAAATTAAAACAATGGAACATGTTGAACAAATTTCCATACAGGTCCAGCAGTTAAAAAAAAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGAACAAAATGTAAGGATTGAAAAGCTGAAGAATCGGGTTCCTACATGCCAAGCTAAGATTGATAAACAACTGCATCAGCTTGAAAAATTAAGTGAAAGCTGCTCTAAGAAGAAAGCTGAAATTGCAAGTATGACGACATCACAAGTTAAGCAAATGAAGGAAAATTTAAGCCACTCTATGACTTTGGCAAGGAAAGAAGAATTTGAACTTCAGCGTGACTGCAAAATCAGAACTAGTAACATACAGAAGATGGTACAACAACTCAAAAGGCTTGAACTACAAAGGCAAGATATTCACGAACAACATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGTGGAAAAACTGAAGGGGCTTCGAGATGAAGTTCGTGCCGCTGAATCAGAATTGGAAAGATTGAGAGAAGAAGAGGCTATATTAATGAACAACATAAATAGGCAAAATGACGATATCAGAAGGATTGATGATAAGATCCAAGATCATGAAAAGAAATATAGTAATATCATGTCTATTCTTCGTGGTCTTCAACAACAACAAAGCAACAAGATCTCAGCTTTTGGAGGAAATAAAGTGATGAATCTGTTACGTATAATTGAGAGATGTCATCACAAGTTTAGGATGCCTCCCATTGGTCCAATTGGTGCCCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCGGTTGAACATGCCATTGGGAAATTGCTCAATTCTTTTATAGTGACTGATCACAAGGACTTTCGTCTTCTGAAACAATGTGCAAAGGATGCAAACTATGGTCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGGCTGATGATACCAGAGCACATGCTTCCTAATACAAACTGTCCATCAACTCTTTCCATCTTACAATGCGAGAATCACACTGTGCTTAATGTCTTAGTGGATCTGGGAAAAGTTGAGAGACAAGTGCTTGTTAACGACTATGATACTGGGAAAGAGGTTGCCTTTGAACAAAGGATTCCAAATCTGAAGGAGGTCTTTACTGTTGATGGATGTAAAATGTTTTCTCGAGGTTCGGTTCAGACAACTCTTCCTCCAAATAGGAAGCTATATGGTCGTCTAAGTAGTTCTGTTGAAGATGACATTAAGAAACTTAGTAATGATGCATCTAATGAACAGAATGCAGCAAATGACTATAAAAGGAATAAAAGGGAGGCAGAGGTCAAGCTTGAGGATCTTGACAGGAAGAAGAATTCTATAAAGAGGTTTTGTGCAAATGCTGGAAGAAGTATTTCTTCTAAGAAGCTAGCTTTGGAGGAGGCAAAGAATCAACAAGCTGCTGAAAGTAGCTCTACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACAAAAATATAAAAGAAGAGCAGGTATTGTTAGAAGGCCTTGAGCAGAGGAGGCATGAAGCAGTGGCAAAAGCAAATGATCTTAAAGTAAAATTTGATGAACTGTGTGAATCAGCAAACACTGAGCTTGCTTTCCTTCAGAAGGCTGAGAGTGAACTAATGGATATTGAAAGAGAAATAGATTCAACCAAAAAGGCAAAGGATCATTATGATAATGTCATGAAAAACAAGGTCCTACATGATATTAAGGAGGCAGAGGAACACTATCTGGAGCTTACAAAAAGGCGTGAGGAGAATGTTGAAAAGGCTTCCATAATTTGCTGTCAGAATGAACTTGCTTTGTTAGGAGGTTGTGATAGCAAAACCCCAGAGGAAATCAGTGCCCAATTAGATCGTCTAAATCATACACTTAGGCGTGAGAGCCAAAGGCATGACTTTTCTCTCTCACACACTATACACACACACATTGAACTATGCTTTTCATTAGTTTGGGTTTTCCTCTGTAGGTACTCTGAATCAATTGATGATCTGAGGATGCTATATGCGAAAAAAGAGCGAAAGATTCTAAAGAAGCAGCAAGTTTACAAAGCCCTTCGGCAGAAACTGAATGCTTGCCAGAATGCTTTAGAGTTTCGAAGGAGAAAGTTTCAGACTAATGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAACGGCCATTTGAAAAAGAAAGGGATTAGTGGAGTTATCAAAGTTGATTATGAGGAGATGACCTTATCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAGAGCTGTTCGAGACACAAGGGGGCTTTCAGGTGGGGAGCGCTCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCACGAAATGACTGAGGCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGACGCAGTAAGTCGAAAAATCAGCCTGGACACTCTGATTGAATTTGCTGAGGCACAAGGATCCCAATGGATATTGATCACCCCACATGATACCGG 3185 0.3865 MKRARDSSSSRVSPSLEAGIIKKLRLENFMCHSNHETEFGNHVNVITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGSSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESTSSITLKDHQGKKVFSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISVEITNARRIVEELETAIRPIEKELNELQIKIKTMEHVEQISIQVQQLKKKLAWSWVYDVDKKLEEQNVRIEKLKNRVPTCQAKIDKQLHQLEKLSESCSKKKAEIASMTTSQVKQMKENLSHSMTLARKEEFELQRDCKIRTSNIQKMVQQLKRLELQRQDIHEQHVKNTQAEESDMVEKLKGLRDEVRAAESELERLREEEAILMNNINRQNDDIRRIDDKIQDHEKKYSNIMSILRGLQQQQSNKISAFGGNKVMNLLRIIERCHHKFRMPPIGPIGAHLKLLNGNKWAVAVEHAIGKLLNSFIVTDHKDFRLLKQCAKDANYGHLQIIIYDFSTPRLMIPEHMLPNTNCPSTLSILQCENHTVLNVLVDLGKVERQVLVNDYDTGKEVAFEQRIPNLKEVFTVDGCKMFSRGSVQTTLPPNRKLYGRLSSSVEDDIKKLSNDASNEQNAANDYKRNKREAEVKLEDLDRKKNSIKRFCANAGRSISSKKLALEEAKNQQAAESSSTPLSSVDEIVEEISEINKNIKEEQVLLEGLEQRRHEAVAKANDLKVKFDELCESANTELAFLQKAESELMDIEREIDSTKKAKDHYDNVMKNKVLHDIKEAEEHYLELTKRREENVEKASIICCQNELALLGGCDSKTPEEISAQLDRLNHTLRRESQRHDFSLSHTIHTHIELCFSLVWVFLCRYSESIDDLRMLYAKKERKILKKQQVYKALRQKLNACQNALEFRRRKFQTNATNLKHQLSWKFNGHLKKKGISGVIKVDYEEMTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLIEFAEAQGSQWILITPHDT 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03097 1061 Gene3D - 20 219 IPR027417 -
Car06g03097 1061 Gene3D - 887 1061 IPR027417 -
Car06g03097 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1057 IPR027417 -
Car06g03097 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 1057 IPR027417 -
Car06g03097 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 7 869 - -
Car06g03097 1061 Coils Coil 343 363 - -
Car06g03097 1061 Coils Coil 768 788 - -
Car06g03097 1061 CDD ABC_SMC6_euk 21 175 - -
Car06g03097 1061 Coils Coil 365 441 - -
Car06g03097 1061 CDD ABC_SMC6_euk 984 1060 - -
Car06g03097 1061 Coils Coil 194 228 - -
Car06g03097 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 891 1060 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Car06g03097 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 7 869 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Car06g03097 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 891 1060 - -
Car06g03097 1061 Pfam RecF/RecN/SMC N terminal domain 21 1057 IPR003395 -
Car06g03097 1061 SUPERFAMILY Smc hinge domain 427 614 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Car06g03097 1061 Coils Coil 903 937 - -
Car06g03097 1061 Coils Coil 254 302 - -
Car06g03097 1061 Coils Coil 797 824 - -
Car06g03097 1061 Coils Coil 712 753 - -
Car06g03097 1061 Coils Coil 637 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03097 Car-Chr6 55597679 55655520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03097 18 1060 Structural Maintenance of Chromosomes family AT5G07660 55.598 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03097 K22804 - gmx:100816916 1507.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03097 06 55597679 55655520 Car06g03097 06 55597679 55655520 ECH