Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03088 ATGACTATCCATAACCATAACCATACATTTGCAATTCCATATACTTTGTTTGTTCTTTTGTTGCTAGCTCAATGTCAAGTATCTTCAGGGTTAACACAAGTTGAAGCCTTGTTCAAATGGAAACAAAGTCTCCCTCAACAACAAATTCTTGATTCATGGATCATTAACAATTCAACTTCAAATTCAACACAAAATACACCATGTTCATGGAGAGGTATCACTTGTGATTCTCGTGGAAGTGTTATAGTCATAAACTTGGCATATACTGGACTTATAGGTACTCTTAAACACTTAAACTTATCAGTTTTTCCAAACCTTCTTCATCTTGATCTCAAAACAAACAATCTCACCGGTATCATACCTGTAAACATCGGTGTTCTTTCAAAACTCCAATTTCTTGATCTTTCTACTAATTATTTCAATGGAACTTTGCCTCTTTCTATATCCAATTTGACTCAACTTTACGAGCTCGATGTTTCAACAAACAACATATCAGGAATATTTGATCGTTGTTTGTTTCCTGATAAACCCAGTTCAAAAATTGGGCTTATCAGCATCAGGAATCTACTTTTTCACGATAACCATTTGGGTGGTCAGGTTCCAAATGAAATAGGGAACATAAAAAACTTGACTGTACTAGCTCTTTATCTAAACCACTTCTTTGGGCCTATTCCTTCATCTTTAGGAAACTGTACACATTTAAGCATTCTTAGATTGCATAAAAACCAATTCTCTGGCCCAATACCTTCCTCTATTGGGAAACTTACCAACCTAACTGATTTAAAGTTTTTCAGTAACAACTTAAATGGTACTGTGCCACAAGAATTCGGAAACCTTTCTTCTTTGATTGTATTACATCTTGCTGAGAACAATTTCATTGGTGAGTTACCACCAGAAGTTTGCAAAAGTGGCAAGCTTGAGAATTTCAGTGCAGCATATAATAGTTTCACTGGCCCTATTCCAAGAAGCCTTAGAAACTGTCCTTCCTTGTTTAGAGTTAGGCTTCAACACAACAACCTAACGGGTTATGCAGATCAAGTTTTTGGAGTTTATCAAAATCTAACTTATATGGATTTTAGCTATAATAAAGTGGAAGGTGATTTATCTTCTAATTGGGGTGCATGCAAAAACTTACAATTTCTCAATATGGCTGGAAATTCAGTGAATGGTAACATTCCAAGTGAGCTTTTTCATTTGGGTCAATTGCACGAGCTTGATATGTCTTTTAACCAATTATCAGGAAACATTCCTTCATACATAGGAAATTGTTCAAAGTTGTATAAATTATATTTGGGTGGTAATAGGCTTTTTGGTAACATACCTATTGAAATTGGAAAGCTTTCAAATTTGGAAAATTTAGACCTTTCAATGAACATGTTGTTCGGACCAATTCCAATTCAAATAGGTGATTGTTCTACTTTGTTGAGCTTGAATTTAAGTAACAATGAATTGAATGGCACAATTCCTTTCCAAATTGGAAACCTTGCATCTTTACAAGAATTTCTAGACTTGAGTTACAATGATTTTTCAGGTGAAATTCCTCCTAATATTGGTAAGCTTTCAAATTTGATAAGCTTAAATATCTCTCACAACAATTTATCAGGTTCTATCCCTAATGCAATTAGTGGAATGTTGAGTTTGTCAACTTTGAATCTCTCTTACAATCATTTGGAGGGAAATGTTCCTAAAGATGGCATATTCAATTATTCTTATCCAATTGATTTAAGCAACAATCCAAATCTATGTGGAAATTTTAAAGGTTTGCAACATTGTAATGTGTCACCCAATGAACCTAGTAATGGAAGTAACAAAATCATGGTTGTGATTTCTATTTTTGCTTCTTTAGGAGGTGCCCTTTTAGTTTCATTGGTGTTTGTTGGTGTATTTTTGTTTTGTTACAAGAAAAAGTCCAGAATTTCAAGACAAAAGTCTTTTTTGGAGATATCAAATCCATTTTCAATTTGGTACTTCAATGGAAGAGTTGTGTATCAAAACATAATTGAAGTTACAAATAATTTTGACAACAAGTATTGCATTGGTGAAGGATCATTTGGAAATGTTTATAAAGTTGAAATGCCAGGTGGACAAATATTTGCTGTGAAAAAGTTGAAGTGTGATGAAGAAAATTTAGACATTAAAAGTATAAAAACATTTAAAAATGAGGTGGAAGCGATGACGGAGACGCGACACAGAAACATTGTGAAGCTTTATGGATTTTGTTGTAAAGGGATGCACACATTTTTGGTTTATGAATATATGGACAGGGGGAGTTTAACTGATATGTTGAATGATGATAAGAAAGCATTGGAATTAGATTGGTATAAAAGGGTTGATATTGTGAAAGGTGTTGCAAGTGCTCTTTCTTATATGCATCATGATTGTTCTCCACTTTTAATTCATAGAGACATATCAAGTAAGAATGTTTTATTGTCTTCCAATCTTGAAGCTCATGTCTCAGATTTTGGGACTGCAAGGTTTCTAAAACATGATTCACCTATTTGGACATCATTTGCTGGCACATATGGATACGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTTTTGGCATTTGAAATTCTATTAGGAAAGCACCCTAGTGATCTTGTTTCTTATGTACAAAGTACTAATGATCAAAAGATAGATTTTAAAGAGATTATAGACTCTCGTGTCCCTCTTCCTCCTCCGCCAAATATGAACATTTTGAAGGTATTGACATTGGTCGCAAATTTAGCTCTTGCTTGTTTACACACAAATCCTCAGTCTAGACCAACCATGAGAAGCATAGCACAGTTGCTAGAAATGGAGAGTACATAG 2847 0.3428 MTIHNHNHTFAIPYTLFVLLLLAQCQVSSGLTQVEALFKWKQSLPQQQILDSWIINNSTSNSTQNTPCSWRGITCDSRGSVIVINLAYTGLIGTLKHLNLSVFPNLLHLDLKTNNLTGIIPVNIGVLSKLQFLDLSTNYFNGTLPLSISNLTQLYELDVSTNNISGIFDRCLFPDKPSSKIGLISIRNLLFHDNHLGGQVPNEIGNIKNLTVLALYLNHFFGPIPSSLGNCTHLSILRLHKNQFSGPIPSSIGKLTNLTDLKFFSNNLNGTVPQEFGNLSSLIVLHLAENNFIGELPPEVCKSGKLENFSAAYNSFTGPIPRSLRNCPSLFRVRLQHNNLTGYADQVFGVYQNLTYMDFSYNKVEGDLSSNWGACKNLQFLNMAGNSVNGNIPSELFHLGQLHELDMSFNQLSGNIPSYIGNCSKLYKLYLGGNRLFGNIPIEIGKLSNLENLDLSMNMLFGPIPIQIGDCSTLLSLNLSNNELNGTIPFQIGNLASLQEFLDLSYNDFSGEIPPNIGKLSNLISLNISHNNLSGSIPNAISGMLSLSTLNLSYNHLEGNVPKDGIFNYSYPIDLSNNPNLCGNFKGLQHCNVSPNEPSNGSNKIMVVISIFASLGGALLVSLVFVGVFLFCYKKKSRISRQKSFLEISNPFSIWYFNGRVVYQNIIEVTNNFDNKYCIGEGSFGNVYKVEMPGGQIFAVKKLKCDEENLDIKSIKTFKNEVEAMTETRHRNIVKLYGFCCKGMHTFLVYEYMDRGSLTDMLNDDKKALELDWYKRVDIVKGVASALSYMHHDCSPLLIHRDISSKNVLLSSNLEAHVSDFGTARFLKHDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILLGKHPSDLVSYVQSTNDQKIDFKEIIDSRVPLPPPPNMNILKVLTLVANLALACLHTNPQSRPTMRSIAQLLEMEST 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03088 948 Pfam Leucine rich repeat 519 557 IPR001611 GO:0005515
Car06g03088 948 Gene3D Transferase(Phosphotransferase) domain 1 753 948 - -
Car06g03088 948 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 4 947 - -
Car06g03088 948 SMART LRR_typ_2 279 303 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 399 423 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 520 543 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 103 127 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 447 471 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 327 350 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 544 569 IPR003591 -
Car06g03088 948 SMART LRR_typ_2 151 174 IPR003591 -
Car06g03088 948 Gene3D Ribonuclease Inhibitor 117 174 IPR032675 -
Car06g03088 948 SUPERFAMILY RNI-like 248 581 - -
Car06g03088 948 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 947 - -
Car06g03088 948 Gene3D Ribonuclease Inhibitor 175 293 IPR032675 -
Car06g03088 948 Gene3D Ribonuclease Inhibitor 294 594 IPR032675 -
Car06g03088 948 Gene3D Phosphorylase Kinase; domain 1 634 752 - -
Car06g03088 948 ProSitePatterns Tyrosine protein kinases specific active-site signature. 798 810 IPR008266 GO:0004672|GO:0006468
Car06g03088 948 SMART serkin_6 673 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03088 948 ProSitePatterns Protein kinases ATP-binding region signature. 679 702 IPR017441 GO:0005524
Car06g03088 948 Gene3D Ribonuclease Inhibitor 27 116 IPR032675 -
Car06g03088 948 SUPERFAMILY Protein kinase-like (PK-like) 646 944 IPR011009 -
Car06g03088 948 Pfam Leucine rich repeat N-terminal domain 32 76 IPR013210 -
Car06g03088 948 ProSiteProfiles Protein kinase domain profile. 673 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03088 948 Pfam Protein kinase domain 676 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03088 948 SUPERFAMILY RNI-like 74 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03088 Car-Chr6 55042965 55048461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03088 13 846 Receptor kinase-like Gene Family AT4G08850 38.782 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car06g03088 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03088 - - aprc:113866080 1357.04