Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03081 ATGAAAGCTAAGCGTGTTGCGCTTCAAAGAAAGGGAGCTGCTGCTATGATTGCTGCTGAGGAGTATGCTCGCCGGTTTGAGTCCGGTGATGTGGTGGATACATCGGGAAATCTTAATGGAGAAGAAcaaggtcaatccaatgtcaaggtcttttgtcgaatgtgcaatCGCGTTGAGAACGAAGGAAGTGAGAGAGCAAAAAAGATGCTGTCGTGTAAAAGTTGCAGTAAGAAGTATCATAGGACCTGCTTGAGAAGTTGGGCTCATAATAGAGATTTATTTCATTGGAGTTCGTGGACCTGTCGTGCTTGCCGAATTTGTGAGGCTTGCAGAAGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGATGTGATGGTGCTTACCATTGTTACTGTCTGCAACCTCCTCATAAGAATGTCAGTACTGGGCCCTATTTGTGCCCAAAACACACAAGGTGTCACAGTTGCAATTCCAATGTCCCTGGAAATGGACTAAGTGTCAGGTGGTTTCTGGGCTACACGTGCTGTGATGCATGTGGAAGATTGTTTGTGAAAGGGAATTACTGTCCTGTTTGTCTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATAATTGCCAGCGCTGGGTACATTGCCAGTGTGATAATATTAGTGATGAAAAATATCACCAATTTCAAGTGGATGGGAATCTGCAGTATACATGTCCAACTTGTCGTGGGGAATGTTATCAGGTCAAGAATCTTGAGGATGCTGTTCAAGAGCTTTGGAGGAGAAGGAATGATGCTGATAGAGATTTAATTACCAGCTTGAGGGCTGCAGCTGGTTTACCAACTCAAGAAGAAATATTTTCTATTTCACCATATTCAGATGATGAGGATAATGTGCCTGTGAAATCAAAGAGTGATTCTGCACGTTCCTTTAAGTTCTCATTTAAGAATTTTCCCAATAACTCACCTATGAAGATGAAAGATAATGGAAAGAAATCTTCAAACAAGAAAACTGCCAAGAAAAAGGACTCTCTGTCATTCATGACTGGTAAAATTGATGCACACCATAGTTTTGAAGGACATAGTGATATTAGGTCATTACATAGCTTGGATGATGATAAAAATGATGATATGCAGTCCCAGAGAAATGAAGTTCCTGATGTTTATGCATCTCCTGCTACCGGAAGCCTGAGTCAAACTGAAGTATCTTGCCCTATCAATCATCCAGGGATTTTGAAACATAAGTTTGTTGAGGAGGTGATGGTCAGTGATGAAGAAAGGAAACCAAGAGTTGTGCGAATTAAAAGCAGTAAGGCAAACATTTTGGATAGTGAGGAGAGTGGAAAACACGTTGATAAGACTCAAAATGTGAAAGGGAAGAAGTTGGTTATAAATTTGGGAGCACGCAAAATTAATGTAGCTAGCTCTCCGCTGTCTGATAATTCAAGCTTCCAGAGAGATCAAGATTTGGTTGCTGCCAATGGTACCCATTTGAGGAAGGGAGACAAGTTTGCATTAGATAGACACGATGGAACAGCTAGACATATTGATGGTAAAGGAAGTAGGGTTGATTCTGGCCAATCAAAGTATTTAAAGGTTTCGGGAAGAGAAGGAAATTTGATCAAGTTGGGAAAAGTTAAGTCAAGTGTTTCTGAAATCAACTTCACCTCTGCTAGAGGCAATATGTCTGATGGGTGTGAAGTCGGTACTTTAGAGCGATCTCAAATCATGCGGGGAAAACGTAGTACTCATGGAATGATTGATCAAGTTGGATTAGATGCAACATCAAGAGGTGAAAGGACGTATTTGGCGAAGCAGTTGGAAGGTAGCTCTGATGTATATGACGAGACACATGACAATAATCACACGCCATCACATTCTTTGCCCAAAGATTCTAAACCTTTACTGAGATTTAAATTCAAAAAGCCTAGTATTGAAAGTCAGAGTTCTCCTCATCGGGAGGAGGAGAAGACCACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTTAAAGAGAAAACACTGTTTAATGAGTCTGAAGGTGTAAGTCAATCTCCTGGAGATGGGAAAATGGACGAGATGATGGATGCAAACTGGATTTTGATGAAATTGGGAAGTGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGAGGTTACTGACACTGTTGAAGGCACCTCAAAGTTACATGTTACTTACGAGGACGGAAGAGTGAGTATCTTGGAACTCAGGAAACAGGGAGTTCGTTTTGTTCCTCAAAAGCAAAAAAGATCGAAGACATGA 2322 0.4044 MKAKRVALQRKGAAAMIAAEEYARRFESGDVVDTSGNLNGEEQGQSNVKVFCRMCNRVENEGSERAKKMLSCKSCSKKYHRTCLRSWAHNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTRCHSCNSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDNCQRWVHCQCDNISDEKYHQFQVDGNLQYTCPTCRGECYQVKNLEDAVQELWRRRNDADRDLITSLRAAAGLPTQEEIFSISPYSDDEDNVPVKSKSDSARSFKFSFKNFPNNSPMKMKDNGKKSSNKKTAKKKDSLSFMTGKIDAHHSFEGHSDIRSLHSLDDDKNDDMQSQRNEVPDVYASPATGSLSQTEVSCPINHPGILKHKFVEEVMVSDEERKPRVVRIKSSKANILDSEESGKHVDKTQNVKGKKLVINLGARKINVASSPLSDNSSFQRDQDLVAANGTHLRKGDKFALDRHDGTARHIDGKGSRVDSGQSKYLKVSGREGNLIKLGKVKSSVSEINFTSARGNMSDGCEVGTLERSQIMRGKRSTHGMIDQVGLDATSRGERTYLAKQLEGSSDVYDETHDNNHTPSHSLPKDSKPLLRFKFKKPSIESQSSPHREEEKTTIKGQRSKRKRPSPFKEKTLFNESEGVSQSPGDGKMDEMMDANWILMKLGSDAIGKRVEVHQTSDNSWHKGEVTDTVEGTSKLHVTYEDGRVSILELRKQGVRFVPQKQKRSKT 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03081 773 ProSitePatterns Zinc finger PHD-type signature. 52 104 IPR019786 -
Car06g03081 773 MobiDBLite consensus disorder prediction 315 329 - -
Car06g03081 773 ProSiteProfiles Zinc finger PHD-type profile. 187 246 IPR019787 -
Car06g03081 773 ProSiteProfiles Zinc finger PHD-type profile. 49 107 IPR019787 -
Car06g03081 773 MobiDBLite consensus disorder prediction 614 693 - -
Car06g03081 773 SUPERFAMILY FYVE/PHD zinc finger 41 106 IPR011011 -
Car06g03081 773 MobiDBLite consensus disorder prediction 614 663 - -
Car06g03081 773 MobiDBLite consensus disorder prediction 330 346 - -
Car06g03081 773 SUPERFAMILY FYVE/PHD zinc finger 187 245 IPR011011 -
Car06g03081 773 SUPERFAMILY FYVE/PHD zinc finger 96 157 IPR011011 -
Car06g03081 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 246 IPR013083 -
Car06g03081 773 PANTHER PHD FINGER FAMILY PROTEIN 2 767 - -
Car06g03081 773 MobiDBLite consensus disorder prediction 315 346 - -
Car06g03081 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 161 IPR013083 -
Car06g03081 773 CDD PHD_SF 51 104 - -
Car06g03081 773 SMART PHD_3 51 105 IPR001965 -
Car06g03081 773 SMART PHD_3 189 244 IPR001965 -
Car06g03081 773 SMART PHD_3 106 152 IPR001965 -
Car06g03081 773 Pfam PHD-finger 189 244 IPR019787 -
Car06g03081 773 PANTHER HISTONE ACETYLTRANSFERASE 2 767 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car06g03081 PHD 2.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03081 - - mtr:MTR_4g037745 1338.94