Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03053 ATGGGTAGGGGAAAAATTGAGATAAAAAGGATTGAAAATGCTAATAGTAGACAAGTTACATTTTCAAAGAGAAGAACTGGGCTGTTAAAGAAGGCTCAGGAACTAGCCATTCTTTGTGATGCTGAGGTTGCTGTTATTATTTTCTCTAATACAGGCAAACTTTTCGAGTTTTCGAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGTGCGGATTCTTCAGAGACTGCAGTAGTGGAATATAAAACAGAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAGTTGCAAAGCTAGAAACAAACCAATTACGGCTATTGGGAAAAGATCTAACAGGATTAGGCTTAAAGGAACTGCATCATCTAGAGCAACAAATTAACGAGGGGTTATCGTCAGTGAAGGAGAGGAAGGAGGAATTACTTATGGAGCAACTGGAGCAGTCAAGAATACAGGAGCAGAAGGCTTTGCTGGAGAATGAAACTTTGAGGAGACAGGTCGAGGAGCTTCGGTGCTTGTTTCCGATGACAGAACATGTAATTCCAACTTATCTTCAGTATCACCATATAGAAAGAAAGAATTCCTTTGTAGAAAATGGTGTTAAATGTCCCAGCTTAGCCCGAAACTGCGCTAACGACAAAGCAGATTCAGACACCACATTGCACTTGGGGTTGCCAAGCGATGTTCATCACAAGAGGAATGCACCCGAGAAGAAAACATTTTCCGACGACTCGTAG 747 0.4083 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCADSSETAVVEYKTEKEDSKMVEILKDEVAKLETNQLRLLGKDLTGLGLKELHHLEQQINEGLSSVKERKEELLMEQLEQSRIQEQKALLENETLRRQVEELRCLFPMTEHVIPTYLQYHHIERKNSFVENGVKCPSLARNCANDKADSDTTLHLGLPSDVHHKRNAPEKKTFSDDS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03053 248 Coils Coil 149 176 - -
Car06g03053 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car06g03053 248 MobiDBLite consensus disorder prediction 228 248 - -
Car06g03053 248 PANTHER MADS BOX PROTEIN 1 232 - -
Car06g03053 248 MobiDBLite consensus disorder prediction 225 248 - -
Car06g03053 248 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 232 - -
Car06g03053 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Car06g03053 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car06g03053 248 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Car06g03053 248 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g03053 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car06g03053 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car06g03053 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car06g03053 248 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Car06g03053 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car06g03053 248 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g03053 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03053 Car-Chr6 53205417 53208982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03053 1 248 MADS-box Gene Family AT5G13790 56.225 2.11e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car06g03053 K-box 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03053 - - zju:107417456 363.999