Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03048 ATGGGTTacctcaatctctcttgcaaagctgaatcctcaatctcaacctcaaactctacatcatcaacatcttcaaAACCAAAAGACAAAGAAGAAAAAACCATCAAGATCCAACAGTTTCAATACAGTGACCTTGAAGCTGCAACAAACGGTTTCTCAGACCAAAAACTTCTCGGCAAAGGAAGCCATGGTTATGTCTACAAAGCCATTCTTCGTGGTCGTCCTGTAGCTGTCAAAAGACCATCAAGACCTCACCATCATCATCACAAACCCATTTCATCATCTTCACCAGAAATCACCAATGAAGTCGATAATGAAATCGATATTTTGTCGAAAATTCATAGCCCCAGGTTGGTTAATTTGGTTGGTTTCACCAATGATGGTTCAAAAGATAGACTTTTGGTTGTTGAGTTTATGAGTAATGGTACACTTTTTGATGTTCTTCATTCTAATTCTTCTAGAACAGTTAATTGGGGTAGAAGAATTCGTTTAGCTTTACAAACTGCTAAAGCTATTGATACACTTCATTCATCAAACCCACCTGTTATTCATAGAGATATTAAATCTGCTAATGTTCTTATTGATCAAAATTTTAATGCTAGGTTAGGTGATTTTGGTTTAGCATTAAGGGGTCATGATAGGATAAGGTCAACTCCACCAGCTGGTACTATGGGCTATCTTGATCCTTGTTATGTAACACCTGATAATTTGAGTACTAAAATTGATGTTTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGAAGGAAAGCAATTGATGTTGCATATTCACCACCATCTGTTGTGGATTGGGCTATTCCACTTATTAAAAAGGGTAAAGTTTTTGCTGTTTATGATCCTAGAATTGCTCCTATTAAGGATGTTTTTGTGAGAAAACAATTGGCTTTGATCGCGGCGAAATGTGTTAGGTCTTGTAGGGAGAGAAGGCCTTCTATGAATGAGGTTGTTAATTGGCTTTGTGGGTTGTGTAAATTGGTTCCTCTTCATTCATGGAATGGTTTTAATAACCCTTGTATGATGGTTGAAACTGTTGGACGCCCGGTCGAAGCGGGGAATGGACGGGTTTTTGGGTCGAGGTTTGAAGGTGTTGTGGAAGAAGGGAATTTCGATGGTTTGGATGCTAGGTTGTCCAAGTCGGCCTTGAGATATTCAAGgagagtgtattcagatttagggtttagcagtaacttgatggatcttatggctagtacagccgaggaggcggaatttcaaagagatggtgatggagttgaacatagtagttcttctaaatcatgcgaacaagtttctagttcaagatttggtagtggaagatatttcacaagaggaaaaaatctttacaggccttgtggtactgataaggatgctttcggactgagtaaagatcatattgtcggggagaattcttcgaaacgggatgaggtttctggatcgacattgaattcttttgcaaccgaggttatctag 1491 0.2857 MGYLNLSCKAESSISTSNSTSSTSSKPKDKEEKTIKIQQFQYSDLEAATNGFSDQKLLGKGSHGYVYKAILRGRPVAVKRPSRPHHHHHKPISSSSPEITNEVDNEIDILSKIHSPRLVNLVGFTNDGSKDRLLVVEFMSNGTLFDVLHSNSSRTVNWGRRIRLALQTAKAIDTLHSSNPPVIHRDIKSANVLIDQNFNARLGDFGLALRGHDRIRSTPPAGTMGYLDPCYVTPDNLSTKIDVFSFGILLLEIISGRKAIDVAYSPPSVVDWAIPLIKKGKVFAVYDPRIAPIKDVFVRKQLALIAAKCVRSCRERRPSMNEVVNWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEAGNGRVFGSRFEGVVEEGNFDGLDARLSKSALRYSRRVYSDLGFSSNLMDLMASTAEEAEFQRDGDGVEHSSSSKSCEQVSSSRFGSGRYFTRGKNLYRPCGTDKDAFGLSKDHIVGENSSKRDEVSGSTLNSFATEVI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03048 496 SMART serkin_6 52 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03048 496 Pfam Protein kinase domain 53 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03048 496 MobiDBLite consensus disorder prediction 78 99 - -
Car06g03048 496 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Car06g03048 496 PANTHER OS01G0750732 PROTEIN 1 479 - -
Car06g03048 496 ProSiteProfiles Protein kinase domain profile. 52 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g03048 496 MobiDBLite consensus disorder prediction 8 24 - -
Car06g03048 496 Gene3D Transferase(Phosphotransferase) domain 1 139 335 - -
Car06g03048 496 Gene3D Phosphorylase Kinase; domain 1 22 138 - -
Car06g03048 496 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN 1 479 - -
Car06g03048 496 MobiDBLite consensus disorder prediction 1 33 - -
Car06g03048 496 SUPERFAMILY Protein kinase-like (PK-like) 35 337 IPR011009 -
Car06g03048 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03048 Car-Chr6 53059904 53061989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03048 29 327 Receptor kinase-like Gene Family AT3G59420 42.671 1.23e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Car06g03048 Pkinase 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03048 - - gmx:100805692 732.25