Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g03030 ATGGAGAGATACCTGAGAGAGAACTTTTACGTGCAGCCAAAGCGCCCCACGGAGGACAACCTTCGGAGATGGAGATCCGCCGTCTCCGTCGTCAAGAATCCTCGCCGCCGTTTCCGATGGGTTGCCAATCTCGCCCAACGCGCCGAAGCCGAACAAAAGCGCAAGAAGCTCCAGGAAAAGATACGAGTTGCTCTTTATGTACAAAAAGCAGCGTTGCAATTTATAAACGCTGCAAACCGCAGTGGCAATTACATGCTCTCCAAACAAGTTCAAGAAGCAGGTTTCGGAATCGAGCCGGACGAATTAGCCTCCATAGTGAGATCACACGACACTAAATGCTTAGAACATCATGAAGGTGTTGAAGGATTAGCGAAAGCAGTCCGCGTATCGTTCCAAGAAGGCGTTAGTTCGAGCGACATAAAACATCGACAAAATATCTATGGAACTAACCGCCATACCGAGAAACCATCCAGGAGTTTATGGATGTTTGTTTGGGATGCAATGCAAGACTTAACACTAATGATTCTTATTGTATGTGCTGTTGTTTCAATTGGTGTTGGAATTTCAACTGAAGGTTTTCCTAAAGGTATGTATGATGGAGTTGGAATCATACTATGTATTATTTTAGTTGTGTTAGTCACTTCAATAAGTGATTATAAACAATCTTTGCAATTTAAGGATTTAGATAAAGAAAAGAAAAATGTGAGCATTCAAGTTACAAGAGATAGTAGAAGACAAAAAGTTTCAATTCATGATTTGGTTGTTGGTGACATAATTCATCTTTCAATTGGAAATATAGTACCTGCTGATGGATTATTCATATCAGGTTTTAGTTTATTGATTGATGAATCAAGTTTATCAGGTGAAAGTGAAGCTGTGAATGTTGATAAACAAAAACCTTTTCTGTTATCTGGAACAACAGTTCAAGATGGTTCTGCTAAAATGCTTGTTACTTCTGTTGGTATGAGAACTGAATGGGGAAGATTAATGGAAACTTTGAACGAAGGAGGCGACGACGAGACACCTCTTCAGGTTAAATTAAACGGCGTTGCTACGCTTATTGGAAAGATAGGATTAGTTTTTGCATTGTTAACATTTTTGGTTCTTACTGGTAGGTTTTTATTGGTGAAAATATTGCACAATGAAATTTCTAAATGGTCTTTAAATGATGCTTCTAAGCTTTTAAATTTCTTTGCAACTGCTGTTATTATAATTGTTGTTGCTGTTCCTGAGGGTTTACCTTTAGCAGTTACATTAAGTCTTGCATTTGCAATGAAGAAATTGATGAATGATAAGGCATTGGTTAGACACTTATCTGCATGTGAAACAATGGGTTCTGCTGGTTGTATTTGCACTGACAAAACTGGAACTTTGACTACAAATAATATGGTTGTTGACAAACTATGGATCTGCGAGCAAACTAAGGCGATTAAAACTGGAAATCGCGATGATAATATGTTGAAGAATTCAGTTTCTGAGGAGATTTATGATCTACTTTTGCAGTCTATATTTCAGAATACTGCTTCGGAGGTTGTAAAAGGCGAAGACGGGAAAATCAAGGTAATGGGGACTCCAACAGAATCAGCATTGCTTGGATTTGGTTTGATTTTAGGAGGTGATTCAAAATTTTACAATGAAAAGTATAAGATTGTTAAGGTTGAACCTTTTAATTCAATCAGAAAAAAGATGTCAGTTCTTGTTTCTCTTCCTGATAGCAGCAACAAAACTAGAGCATTTTGTAAAGGGGCATCAGAAATAGTTGTCAAAATGTGTGATAAAGTTGTTAATGCAGAAGGAAAAGTTGTTGATTTGAATGAACAACAAAGAAAAAGTATCACAGAAGTTATTGATGGTTTTGCTTCTGAGGCACTGAGAACACTGTGCATAGCCTTTAAGGATATTGAAGGGTCCTCTGAAAACATTCCTGAGGATAAATATGTTTTGATTGCTATTATTGGAATTAAGGATCCAGTGAGGCCTGGAGTTAAAGAAGCTGTTAAGACTTGTTTACAAGCTGGAATTACTGTTAGAATGGTAACTGGTGATAATATAAACACTGCTAAAGCTATAGCTAGAGAATGTGGTATTTTGACTGATGGGTTGGCCATTGAAGGACCAGATTTCAGGAATAAGACTCAGCAAGAAATGGAACAGATAATACCTAAATTACAGGTGATGGCTCGATCGTTGCCACTTGATAAGCACACTTTAGTGACCCATTTGAGGAATGACTTTAATGAAGTTGTGGCAGTAACAGGTGATGGGACCAATGATGCTCCAGCTTTGCATGAGGCTGATATTGGATTCGCTATGGGTATTGCTGGAACTGAGGTTGCAAAAGAGAATGCGGATGTGATTGTAATGGATGATAACTTTGCCACCATAGTGAATGTTACAAGATGGGGCCGTTCTGTTTATATCAACATACAAAAGTTTGTTCAGTTCCAGTTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTTGTTTCAGCTTGTGTTTCAGGTTCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATTATGGACACACTTGGTGCATTGGCATTGGCTACAGAACCCCCTAATGATGGGTTAATGAAGAGGCCACCAATTGGAAGAAATGCAAGTTTCATTACAGGGGTCATGTGGAGGAACATAATTGGTCAAAGCATTTATCAAACCATTGTCCTTTTGATTCTTAAATTTCGTGGGGAACATATTCTCAAACTCAATGGACCTGATGCTTCCTCTATTTTGAATACTGTTATATTCAACACCTTTGTCTTTTGCCAGGTATTCAACGAGGTAAACAGCCGAGACATGGAGAAGATTAATGTTTTTCAAGGCCTATTCAGTAGCTGGATTTTTCTGATGGTAATGGCTTCAACAATATGCTTTCAAGTCATAATAGTTGAATTTCTTGGTGCATTTGCTCAAACAGTGCCACTGAGTCGAGACCTGTGGTTAACCAGTATCATTATTGGTGCGTTAAGTTTAGTAGTAGCTGTTGCTCTAAAGTGCATTCCAGTTCCTGTCAGAAATTACGTCTCAACTCATCATGATGGTTACGAGCCACTCCCCACTGGACCAGAGCTGGCATGA 3111 0.386 MERYLRENFYVQPKRPTEDNLRRWRSAVSVVKNPRRRFRWVANLAQRAEAEQKRKKLQEKIRVALYVQKAALQFINAANRSGNYMLSKQVQEAGFGIEPDELASIVRSHDTKCLEHHEGVEGLAKAVRVSFQEGVSSSDIKHRQNIYGTNRHTEKPSRSLWMFVWDAMQDLTLMILIVCAVVSIGVGISTEGFPKGMYDGVGIILCIILVVLVTSISDYKQSLQFKDLDKEKKNVSIQVTRDSRRQKVSIHDLVVGDIIHLSIGNIVPADGLFISGFSLLIDESSLSGESEAVNVDKQKPFLLSGTTVQDGSAKMLVTSVGMRTEWGRLMETLNEGGDDETPLQVKLNGVATLIGKIGLVFALLTFLVLTGRFLLVKILHNEISKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNNMVVDKLWICEQTKAIKTGNRDDNMLKNSVSEEIYDLLLQSIFQNTASEVVKGEDGKIKVMGTPTESALLGFGLILGGDSKFYNEKYKIVKVEPFNSIRKKMSVLVSLPDSSNKTRAFCKGASEIVVKMCDKVVNAEGKVVDLNEQQRKSITEVIDGFASEALRTLCIAFKDIEGSSENIPEDKYVLIAIIGIKDPVRPGVKEAVKTCLQAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTQQEMEQIIPKLQVMARSLPLDKHTLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFATIVNVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPNDGLMKRPPIGRNASFITGVMWRNIIGQSIYQTIVLLILKFRGEHILKLNGPDASSILNTVIFNTFVFCQVFNEVNSRDMEKINVFQGLFSSWIFLMVMASTICFQVIIVEFLGAFAQTVPLSRDLWLTSIIIGALSLVVAVALKCIPVPVRNYVSTHHDGYEPLPTGPELA 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g03030 1036 Gene3D - 17 76 - -
Car06g03030 1036 SFLD C1.7: P-type atpase like 433 804 - -
Car06g03030 1036 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1020 - -
Car06g03030 1036 Pfam haloacid dehalogenase-like hydrolase 449 766 - -
Car06g03030 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Car06g03030 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 662 IPR023299 GO:0000166
Car06g03030 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Car06g03030 1036 PANTHER CATION TRANSPORTING ATPASE 3 1020 - -
Car06g03030 1036 SMART Cation_ATPase_N_a_2 114 188 IPR004014 -
Car06g03030 1036 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Car06g03030 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1014 IPR023298 -
Car06g03030 1036 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Car06g03030 1036 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g03030 1036 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g03030 1036 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g03030 1036 Gene3D - 461 657 IPR023299 GO:0000166
Car06g03030 1036 Pfam E1-E2 ATPase 236 429 - -
Car06g03030 1036 Pfam Cation transporter/ATPase, N-terminus 115 183 IPR004014 -
Car06g03030 1036 SUPERFAMILY HAD-like 450 857 IPR036412 -
Car06g03030 1036 CDD P-type_ATPase_Ca_PMCA-like 142 885 - -
Car06g03030 1036 SFLD p-type atpase 433 804 IPR044492 -
Car06g03030 1036 Pfam Cation transporting ATPase, C-terminus 837 1009 IPR006068 -
Car06g03030 1036 Gene3D - 134 334 - -
Car06g03030 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 549 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g03030 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 519 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g03030 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g03030 1036 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Car06g03030 1036 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Car06g03030 1036 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Car06g03030 1036 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Car06g03030 1036 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Car06g03030 1036 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Car06g03030 1036 Gene3D - 166 1011 - -
Car06g03030 1036 Gene3D - 448 797 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g03030 Car-Chr6 52338277 52360005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g03030 57 1033 Primary Pumps ATPases AT3G57330 69.561 0.0 1395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g03030 K01537 - gmx:100805063 1741.09