LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g03005	ATGGCTTCACGTTTTCATGAATCCTTCACACGAGATGCACTTCGCTCTTATTTCGCAGAGTTTATTTCCACTTTCTTCTATGTCCTTATTGTTATTGCCTCTGGAATGTCTTCAAGGAAGTTGATGCCTGATGCTTCAGTGAACCCAACAAGTTTGGTTGTTGGAGCAATTGCAAATGCTTTTGCTCTGTCCTCAGTTTTGTACATTGCATGGGACATTTCAGGTGGACATGTTAATCCTGCTGTCACATTTGCAATGGCTGTTGGAGGACATATTAGTGTCCCAACTGCTCTCTTCTATTGGATTGCCCAACTTATTGCCTCTGTTATGGCTTGCTTTTTCCTCAGACTCTTTCTTGTTGGAATGCATGTGCCAACTTATTCAATTGCAGAAGAGATGACAGGTTTTGGAGCATCAATATTAGAGGGTATATTAACATTTGTTTTGGTGTACACAATATATGCTGCAAGGGACACTAGGCGTGGTGGTCAACAATTGAGTTCAACACTTGTAATTGGTTTAATATCAGGAGCAAGTGTTTTAGCAGCAGGTCCATTCTCTGGTGGATCAATCAACCCTGCTTGTGCTTTTGGCTCTGCTTCCATTGCTGGAACTTTTAGGAATCAAGCTGTTTATTGGGTTGGTCCTTTGATTGGTGCTACTGTTGCTGGTCTTCTTTATGATAATGTGTTGTTCCCTTCTCAGAGTTTAGATTCAATTAGAGGGGTTTCTGAAGTAAATGTTAGGGTGTAA	753	0.4104	MASRFHESFTRDALRSYFAEFISTFFYVLIVIASGMSSRKLMPDASVNPTSLVVGAIANAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWIAQLIASVMACFFLRLFLVGMHVPTYSIAEEMTGFGASILEGILTFVLVYTIYAARDTRRGGQQLSSTLVIGLISGASVLAAGPFSGGSINPACAFGSASIAGTFRNQAVYWVGPLIGATVAGLLYDNVLFPSQSLDSIRGVSEVNVRV	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g03005	250	SUPERFAMILY	Aquaporin-like	5	235	IPR023271	-
	Car06g03005	250	PRINTS	Major intrinsic protein family signature	15	34	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	PRINTS	Major intrinsic protein family signature	59	83	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	PRINTS	Major intrinsic protein family signature	96	115	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	PRINTS	Major intrinsic protein family signature	141	159	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	PRINTS	Major intrinsic protein family signature	173	195	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	PRINTS	Major intrinsic protein family signature	210	230	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	PANTHER	AQUAPORIN TIP5-1-RELATED	2	248	-	-
	Car06g03005	250	Pfam	Major intrinsic protein	11	227	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car06g03005	250	ProSitePatterns	MIP family signature.	77	85	IPR022357	-
	Car06g03005	250	PANTHER	AQUAPORIN-8	2	248	IPR034294	-
	Car06g03005	250	Gene3D	Glycerol uptake facilitator protein.	1	241	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g03005	Car-Chr6	51463877	51465723	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g03005	2	236	Major Intrinsic Protein MIP	AT3G47440	60.851	2.76e-102	296

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g03005	K09873		-	gmx:100801448	401.749

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car06g03005	06	51463877	51465723	Car06g03005	06	51463877	51465723	ECH