Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02993 ATGGGTTTTTGGGATAGGCTTTGTGCTGCAATTTCTGTTAGGAAGGTCAGTGTGATGGATTTGTCCAAGAAGTTTAGTCTGGATTATCGATTGCTTCATGCAGTCACCAAAGGGCATTCTTGGTATGGCAATTGGGGTTATGAATTTGGGACTGGTTGCTATGCTCTTACCAAAGATGAGTACAAGAAGTCCGTAGATACCTTGTCCAACATGCCTTTGTCCTCATTTTTATTCCAGGGTCGAGGGCCTAGAAACCGCTTGCAGTCTGTTATTTCTCTTTACCAATCTTTGGCAGAAACTGAACTTGTCACAGTTAAAGACCTCTTCTCCTTTTTGTTGGCATTGGTTCATAAATTTCGTAAGCCCAGAAGTAATAGGTCTGCTAAACAACATGAATACACAAGTCCATGTAATTTATTATGTGCATGGACAATAAACGATGTAGAAGACGTGCAACAGGCTTTGATCAAGGTATTGCTTGCTTCAGGTGCGAGTAATGAGTCCAAATGGGTAACAAGGCAAACTCTCAAGGGAGCAGTGAGTAGGCGTGTTGGATCTCCAGAGCTTCTGGACTACAGTCTTAAGCACTTGCAAGGGAAATTATCTGCAAATGGATTGGTTGTAAATTCGCGTTGCAATCCCATATCTAGTGCTATCGAGTTCAGATTGGGACCTTTGATGACTGGATTTAGCTCAAATTCAAACTATCCTTCAGAAGAGCAAGTGATTTCTGATTTGACATTCTTATTTAATTCAATTCTTCACCCTGAAAAAATGATCAGCTACAGACCTAAGATTATGAGGAAAAAGGTGGCTGATGCAGCCAGGAAGCTTCTTGACTGTAAGCAGTTTATGAAGGACTATAAAACTGATCAAATGAACACAGAACCATCTTCAGTTATTAATCTGTGGTGTCATGTTGAGCTTTCTGACCAGCCTAAAGATGACCACCCATCACCCCCGCCAGAGCTTGTTGTGTTGCCTTTGGATGCTACTGTTGCTGACCTCAAGGAAGAAGTCACTAGGGCTTATCAAGAGGTATATGCAATGTACAAAAGATTTCAAGCTGAGGAACTTCTAGGATATGGTTCCATCAGTGATTTACTCACTGTCAAATTCCTAATGGGAACAAGTGGATCAGTTCAAGTTCAAGGAAGATGTCCAGCTAAACATGGCTTAAGTCGTTTCCGAATGGAACGAGGAACAGAAGAGTGGAAAGTTGATTGCATTTGTGGTGCTAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACTTGTGGTGTCTGGCTGCATACCAGATGTGCTGGAATTGGGAGTTCTGATGGTATGCCTTCCAAGTTTATATGTATAAGATGTGTTAACTCATACCGTCGGGGAACAAAAAAATTGCCAGTCTCTAGCGTGGGAGATGGCGAGGCTTGTAAATTGAACACATCTTGCAGAGATGAAGCGGTAGCTACTGACTCTGCAGCTGTTGCTTGTAATATAAATGTGAATTTTGGTGTACGTTGA 1515 0.4172 MGFWDRLCAAISVRKVSVMDLSKKFSLDYRLLHAVTKGHSWYGNWGYEFGTGCYALTKDEYKKSVDTLSNMPLSSFLFQGRGPRNRLQSVISLYQSLAETELVTVKDLFSFLLALVHKFRKPRSNRSAKQHEYTSPCNLLCAWTINDVEDVQQALIKVLLASGASNESKWVTRQTLKGAVSRRVGSPELLDYSLKHLQGKLSANGLVVNSRCNPISSAIEFRLGPLMTGFSSNSNYPSEEQVISDLTFLFNSILHPEKMISYRPKIMRKKVADAARKLLDCKQFMKDYKTDQMNTEPSSVINLWCHVELSDQPKDDHPSPPPELVVLPLDATVADLKEEVTRAYQEVYAMYKRFQAEELLGYGSISDLLTVKFLMGTSGSVQVQGRCPAKHGLSRFRMERGTEEWKVDCICGAKDDDGEKMLACDTCGVWLHTRCAGIGSSDGMPSKFICIRCVNSYRRGTKKLPVSSVGDGEACKLNTSCRDEAVATDSAAVACNINVNFGVR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02993 504 SUPERFAMILY FYVE/PHD zinc finger 398 457 IPR011011 -
Car06g02993 504 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 477 - -
Car06g02993 504 Pfam PHD-finger 409 455 IPR019787 -
Car06g02993 504 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 477 - -
Car06g02993 504 SMART PHD_3 408 454 IPR001965 -
Car06g02993 504 ProSitePatterns Zinc finger PHD-type signature. 409 453 IPR019786 -
Car06g02993 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 459 IPR013083 -
Car06g02993 504 ProSiteProfiles Zinc finger PHD-type profile. 406 456 IPR019787 -
Car06g02993 504 CDD PHD_MMD1_like 408 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02993 Car-Chr6 51126062 51128360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02993 1 453 PHD Transcription Factor Family AT5G22260 28.099 2.34e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car06g02993 PHD 2.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02993 - - mtr:MTR_4g035550 763.451