Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02988 ATGACTCCAGTTAATTTGGCAGGACAGTTTGGTGACACAACTTACACCAAGGTTTTTGTTGGAGGGTTGGCTTGGGAAACTCAAAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCGGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTATAATTGATGGTAGGAGAGCTAATTGCAACCTTGCTTCTTTGGGTGTTCAAAGATCTAAGCCTTCAACACCAAAGCATGGAGGAACAGGTAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCGCCGGATTACAGTTATCCTACGAGCTACTACGGTTTATACGGTGGAGCAGCAGCACAGTACCCAGTTTACGGAAGTGGACCAGCTGGAGGGATGATGAGTGGTGCTGCAGCCGCAGCAGCAGCGTTCTATCCATATCTTCAGTACGGCGAAGGAAGTGGCGGCGCCACTACCGGCGGCTACACTTCCGGTCAAGGTTATGGTGTTAATTATCAACCTCAAGTGTTTCAGTATTCTCCAATTGCTTCAACTGGCGGTTATGCTCAGCACTATGGTACCCCCATTTCTCTTGCACCTTCCCCAGCCTTGCAATCAGGCGTGACAATGGCTCCTCAAGCTCAAATACCTCATCGTTAG 819 0.4701 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGTGRNFRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGLYGGAAAQYPVYGSGPAGGMMSGAAAAAAAFYPYLQYGEGSGGATTGGYTSGQGYGVNYQPQVFQYSPIASTGGYAQHYGTPISLAPSPALQSGVTMAPQAQIPHR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02988 272 SMART rrm1_1 17 89 IPR000504 GO:0003723
Car06g02988 272 Gene3D - 7 112 IPR012677 -
Car06g02988 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Car06g02988 272 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Car06g02988 272 PANTHER OS01G0876800 PROTEIN 1 266 - -
Car06g02988 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Car06g02988 272 PANTHER BOULE-RELATED 1 266 IPR037366 GO:0003729
Car06g02988 272 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02988 Car-Chr6 50919192 50928007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02988 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 9.27e-14 68.9