Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02981 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTACTTACACTCTTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCAGCTCGGCAGATAGGGGAGATTGCAAAATCGCACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTATGCAGTAAAAAATGGGATACAAGGGTTGCAGCTGCCCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGCTTGAATGAACTCATTGCTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGTGTTGAGGATCTGTGTGCATGGCCTTATTTACAAACAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTATTAGCATCGGGAGGACAGGAATACGATATTGGAACTGATAATATAAAGAACCCAAAGGAGCGATTGGTTCGCCAGAAGCAAAATCTCCGACGCCGTTTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGACGAAGATCTTTTGGCACACAGATCAGACTCGTATCTCAATGGCATAGATCATAAAGTTTTTACATCTTGTTCGGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCGAGTGCTAGAGAACTGAATCTTCTAAAACGTAAAGCAAAAATTAATTCAAAGGACCAAACAAAGAGCTGGTCTGAAGATGCAACAGAGACTTCAGGCGCTCAAAATTTGACTCCAAAAGGCACATGTCCTGATTCAGTAAATCATAGTAAGGCATTTGCGCAAGTTAATTATGATGAAGATGGGTTTGAGCATGATGGAGATGGACAATGGCCTTTCAGTACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACCCATCAAGGTGCTTCTGCTGGCGTGTTTAAACACGACCCACACTTGGGTGAGACCTCGTTCGTGGAATCAGAAGACAAAAATATATCAAATACGTTGAAGAGAGAGAGGGACATTGATTTAAATTTGCAAGTATCAGCAGATGAGTATGTCTTGAACTTGAAGAGGCCAAAACTTGAAGATGTATCATTGTCAGCCTCTATAGATAGTGTGATGACTTGCAGCAATGATGGTGATATTGAAAACAGCGTTAGTTCTGAAACCCAGGGGTGCAATTTACCTCTGGATTGTGGTAATGGGAAATATGATGGTAGTTCTTTTGACATGAATCTGGAAACTCACTCTGACAGTTTACATGATGCATGCAAGGAACCTGCTAATATAGCAGTGCAGAAGGGTTATTCTGTCGACACAAATATTGCCTCTGGAAAACGTAATCTGCTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTTGGTTAAAGTGGCTAGAAGTTCCTGGCTTCGAAACTGTGAATTTCTTCATGACTGTGTCATACGCTTTTTGTGTGTATTGTCACTCGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCTTTCAAGTATATGCATGCTGCACTAGTGAATGAAACACTGAACATATTATTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGCATCAAATATTTGGTTGCTGTACGGCAGGAGATGCTTTCCGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGATCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACACTACATTCAATTGTGATGCTGTTGTGGGATATAATGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCTCATGAAGAGATGGTCCCGAAGATGTGTAAAGTTCTTAAATTGGAAGACAAGGAAATAGAAAATGGAGCTGGTGGTTGTGGTGATGTTGAAGAAAATCCTTTTGTACTTGCAACTTTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCTATACGAACTCTGGAGAGGCTACTTGAAGCTGAATATAAGAGAAGCGTGTCTGAGCTTTCTAGTGCTTCATTTTGGCCCTCTTCTATAATTGGAGATACCCTTAGAATTGTATTTCAGAATTTACTATTGGAAACGAATGAAGGTGTTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTGCAAGGTCTTACATGTCATCCTGGACAGAACTTGCATCTACACCTTTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGCGAAGATTGAAAATGAATATGGTGGAGATCTTGGTCTTGAATCTACTAAATCAACGATTCCGCAAGATAGAAATGGAGATGTTCCTACGAATTCCATTAAGATAGTTGTTGGTGCTGAGGTTGACACGTCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTTGCTTCTAAGCTTCCAAAGGTTTCTTTAAATTATGTAATTGATCCACTGTGGAGTTCATTAACCTCTCTGTCCGGTGTCCAACGCCAGGTTGCATCGATGGTACTTATTTCTTGGTTCAAGGAGATTAGGATCAGGAATTTGTCTGAAAATCTCAATGGTACTCCTACTTTCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCTGCATTCCCAACAAAAGGTTCACTTCTTCCTTATGCCGAGCTTTCAAGAACTTATTCAAAGATGCGAAGTGAGGCTGGTCAGTTGCTAAATGCAGTCAAGTCTTCTGATATGTTTAGCGAGTTATCAACAACCAATATCGAGTTGGATAACTTGAGTGTGGATGATGCCATTGGCTTTGCATCAAAAATTCCTGCAATGTCTAATGATAGTTCTGCAAATGATTCTTTGAGAAAGAACATTATGGATGATATTGAATCGTCAAAACAGAGGCTCTTAACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCTGCTGCAGTTGTGTGGATGTCTGAATTTCCTTCACGGCTCACTCCCATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAGCAGGAGGAAATACTGCAAATTAAGTCAGCTGAGGCTCTTGCTGAGTTAATATATCACTGCGTCTCACGTAGACCTTGCCCCAATGATAAATTAATTAAGAACATATGTAGTTTGACTTGCATGGATCCCTCTGAGACTCCCCAAGCTAAATCCATTTGTTCCATTGAGAGTATCGATGACCAAGGTCTTCTGTCTTTCAGAACTCCTGTGAATAAACAGAAGTCAAAGGTGCATGTGCTGACTGGTGAGGATCGATCTAAGGTGGAAGGATTTATAAGTAGACGTGGATCTGAGCTATCATTGAGGCTTCTGTGTGAGAAGTTTGGTGTTTTGCTATTTGATAAGCTTCCCAAGCTATGGGATTGCCTTACTGAGGTTCTTAAGTCAAGCTCCTCTAAATCTCTACTTGCTGCTGATGATGCTTCTGAGGCAATTGAGTTTGTTTGTGATCCTCAGACCTTGATTAACAATATCCAGGTCGTGCGGTCTGTTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACACTCCTCCTATCCATTTTTAAATGTGTTAAACATTCTCATGTCGCAGTTAGACTAGCTGCTTCACGCTGCATCACTTCCATGGCCCAGTCAATGACCGTGAAAGTTATGGGAGCCGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCGTCAGTTCATGCCCGACAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTTGAGTTGGTTCCTTATGCTCCTCTGCTGGTAGTTCCTCTTTTACGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCTCTTGTACCTCTACTTCCTTTAGCACGCGGTGTTCCTCAACCAATTGGAGTAGGGGAAGGTATATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAACTACTTGATAACTCGCACATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACTTTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAGGCATCAGCAATTTTGGCCTCTGATATAGTTGAGCATCAAACTCAAATCGGCAATGAGGATCTTCTGCCATCTTTAATCATTTGCCCGTCAACACTAGTTGGACACTGGGCCTTTGAGATAGAAAAGTATATTGATGCTTCAGTCATATCTAGTCTTCAGTATGTTGGGTCTGCACAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAGCATAATGTTATTATAACGTCATATGATGTTGTCCGTAAAGATACTGATTATTTCGGACAGCTGTTGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAATCCAAAGTTACTCTCGCTGTAAAGCAGTTGAAAGCTCAACACCGTTTGATACTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAAGCACATATGGAAAACCACTTGTAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGAGGCCGAAGCTGGAGCGCTTGCTATGGAAGCATTACATAAGCAGGTCATGCCTTTCCTTCTTCGGAGGACAAAGGATGAAGTCTTGTCCGATCTGCCAGAGAAAATAATCCAAGATAGATACTGTGATTTGAGCCCTGTACAACTTAAACTGTACGAACAGTTTTCTGGTTCTCGTGCAAAGCAAGAGATGTCATCTGTAGTAACAACGAATGAGTCAGCTGCCGCAGAAGGAAGTAGCAGTTCTACTAAAGCATCTTCACATGTTTTCCAGGCACTACAGTACTTGCTAAAACTCTGTAGTCATCCGTTGCTTGTAATTGGTGGGAAGATTCCAGATTCATTCTCTAGCATCCTTTCGGAACTGTTTCCTGCTGGCTCTGATGTCATTTCAGAACTTCACAGACTCCATCACTCCCCAAAATTAGTTGCTCTTCACGAGATTCTTGAAGAATGTGGAATTGGAGTCGATGCTTCAAGTTCTGAAGCTGCTGTTGGCATTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAAGCGTTCTTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAATGTCACATATCTGCGGCTGGATGGATCAGTTGAGCCCGAGAAGCGATTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTACTTACGACTCATGTGGGCGGGCTTGGTTTGAACCTAACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGCCAGAAAAAAGTAGTTAATGTTCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAGAAGTTTAAGGTGTCGGTGGCTAATGCTGTCATTAATGCGGAAAATGCCAGTTTGAAAACCATGAATACAGATCAGCTGCTCGATTTATTTGCTTCAGCAGAAATCCCCAAGAAGGGGTCTTCTGCTGTGAAGAGTTCAGAGGACAACTTTGATGGAGACACTAAATTAGTGGGAAATGGAAAGGGATTGAAAGCAATTCTTGGGGGATTAGAGGATCTATGGGACCAATCACAATATACAGAGGAGTACAATCTCAGTCAATTTTTGGCGAAGCTTAATGGTTAA 6135 0.416 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLCSKKWDTRVAAAHAIGSIAENVKHISLNELIASVVTKMSESGISCSVEDLCAWPYLQTKITGSSFRSFDMNKVLEFGALLASGGQEYDIGTDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHRSDSYLNGIDHKVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWSEDATETSGAQNLTPKGTCPDSVNHSKAFAQVNYDEDGFEHDGDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHDPHLGETSFVESEDKNISNTLKRERDIDLNLQVSADEYVLNLKRPKLEDVSLSASIDSVMTCSNDGDIENSVSSETQGCNLPLDCGNGKYDGSSFDMNLETHSDSLHDACKEPANIAVQKGYSVDTNIASGKRNLLRNLPQNCELMNLVKVARSSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDIMLDLDDLSPSTSSVMNLLAEIYSHEEMVPKMCKVLKLEDKEIENGAGGCGDVEENPFVLATLAPRLWPFMRHSITSVRYSAIRTLERLLEAEYKRSVSELSSASFWPSSIIGDTLRIVFQNLLLETNEGVLQCSERVWSLLVQCSVEDLETAARSYMSSWTELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAAKIENEYGGDLGLESTKSTIPQDRNGDVPTNSIKIVVGAEVDTSVTRTRVVTATALGIFASKLPKVSLNYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIRIRNLSENLNGTPTFLKDWLLDLLACSDPAFPTKGSLLPYAELSRTYSKMRSEAGQLLNAVKSSDMFSELSTTNIELDNLSVDDAIGFASKIPAMSNDSSANDSLRKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQIKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSIESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKVEGFISRRGSELSLRLLCEKFGVLLFDKLPKLWDCLTEVLKSSSSKSLLAADDASEAIEFVCDPQTLINNIQVVRSVAPLLNEELKPKLLTLLLSIFKCVKHSHVAVRLAASRCITSMAQSMTVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGVGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAILASDIVEHQTQIGNEDLLPSLIICPSTLVGHWAFEIEKYIDASVISSLQYVGSAQDRMLLRDSFCKHNVIITSYDVVRKDTDYFGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQSTYGKPLVAARDPKCSAKEAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRAKQEMSSVVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGGKIPDSFSSILSELFPAGSDVISELHRLHHSPKLVALHEILEECGIGVDASSSEAAVGIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKKGSSAVKSSEDNFDGDTKLVGNGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02981 2044 MobiDBLite consensus disorder prediction 242 271 - -
Car06g02981 2044 SMART helicmild6 1840 1926 IPR001650 -
Car06g02981 2044 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1976 IPR044972 GO:0003677|GO:0016887|GO:0017025
Car06g02981 2044 SUPERFAMILY ARM repeat 6 1488 IPR016024 -
Car06g02981 2044 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1816 1976 IPR001650 -
Car06g02981 2044 Gene3D - 1421 1679 IPR038718 -
Car06g02981 2044 Gene3D - 506 731 IPR011989 -
Car06g02981 2044 Gene3D - 1263 1408 IPR011989 -
Car06g02981 2044 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1460 1630 IPR014001 -
Car06g02981 2044 Pfam SNF2-related domain 1466 1762 IPR000330 GO:0005524|GO:0140658
Car06g02981 2044 CDD SF2_C_SNF 1795 1937 - -
Car06g02981 2044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1427 1680 IPR027417 -
Car06g02981 2044 Gene3D - 1690 2004 IPR027417 -
Car06g02981 2044 Pfam Domain of unknown function (DUF3535) 780 1233 IPR022707 -
Car06g02981 2044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1681 1982 IPR027417 -
Car06g02981 2044 CDD DEXHc_Mot1 1448 1680 IPR044078 GO:0005524
Car06g02981 2044 SMART ultradead3 1444 1640 IPR014001 -
Car06g02981 2044 Gene3D - 4 94 IPR011989 -
Car06g02981 2044 Pfam Helicase conserved C-terminal domain 1826 1926 IPR001650 -
Car06g02981 2044 MobiDBLite consensus disorder prediction 251 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02981 Car-Chr6 50611177 50637715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02981 1443 1981 RAD5 or RAD16-like Gene Family AT1G02670 26.500 1.38e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car06g02981 DUF3535 5.1e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02981 K15192 - gmx:100777977 3408.62