Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02942 ATGGAATCGAATAATACTCCTTACGAAATCGTTGACGACGACGAGGGATTTGATTGGGAAGCAGCTGCAAGAGAAATCGATGAAGTTTGCCAAATGAAAATTGACGCaaaaacaaatggaaacgaaacggaaaaggtttgtcaaaagggaaaaggaaagggaaaGCAATCAACACTCGATAACTTCGTTGGAATTGCAAAAAAGGAAACCCCAACGGTTCAGGTTCAAGAAAATGATGCTAAAGAAGAAGATGAAGAATATACATGCATCCACAACATTGACACTGAAGCAGCCAAAACATGGACATACCCAGTTAATGTTCCTCTTCGTGATTATCAATTCCATATTACCCAGTCTGCACTCTTTCAAAATACATTGGTCGCATTGCCAACAGGACTTGGCAAAACTCTCATTGCCGCTGTTGTCATGTATAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCTTGCCATAACATTGTGGGGATACCTCAAGAATGGACAGTTGATATGACTGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACACCACAAGTTTTGGAAAAAGACATTCATTCTGGTAAATGTTTAGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCATAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTGCAACTAAGAATATTAGCGTTGACTGCAACACCAGGATCAAAGCAGAAGACCGTCCAGGATGTTATTGATAATTTGCATATCTCCAAGCTTGAATATCGTAGTGAAACTGACCACGATGTTATCTCATATGTTCACGACAGGAAGATAGAGTTGATACAGGTAGTTGCGATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGACGTGATACGCCCTATAGTAGCCAGGCTGACTAATATTGGGGTCATTCAGAATAGAGATTATCGAACTTTGAGCCCTTGTGTATTACTTGAAATAAGGGAAAAGTTTCGTCAGGGGCACATGCAAGATCATTCACATATCAACTTTGGAGATGTTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAACTGATTTCAAGTCATGGAATAAGGCCAGCATATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTCTTTTGCAAAATTTATGAGTAAAAATGAAGGTATTCTGAAAGCACAGCAACTAATGCAGCAAAACTTGTCTCATGGAGCGCAGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTGCTGGAGCATTTCAAAACCAATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGATGCACTTGGAGGTACTGGGGATCAAGTTAGAGCTACCCAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCTCAGAAAGTTCAACAGGCTGTGCTAAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGCGAAGAAGGCCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGAGAATGGGGAGAACTGGAAGAAAGCATGATGGACGAATTCCTCACGTCCTTAAACCAGAAGTGCAATATGTAGAACTGTCTATTGAGAAATTTATTCCTCGACAAAAGAATGTGAAAGAAGACCATATCCAAATTTCTGCATCGAATGACAAACTCACACTTGCTGAAATTGATTTACTTGAAAAATATTTCCACTCTACTGGTGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTTTCAGACATTTCCTTCTAGAGTTCATAAAGTGGAGCATTCCTGTGGGACATTGATGCTTATAGACATGATGCGACGTCTGCAAGGACTGGCAGCTTGTCCAGGAGATAGCAAAAATTCTACCATTCAGAGTACACTGTATAATGGAAGGTCCTTTTTATTTCTATCCTCTACTACAGATAATGAATTGTTCTCTAGGGATACAATGGGAAGGAATGCAGAGTCTGTAAATTGTCTAGAGAGTTTGTCTCCCATGAGACGCTCTAACAAACTTCAAACCAAAGACTTTGTTGATCTAACTCTGCAAGATAGTACTTACTGTGACATGGGCAAGCATCAAGAGGAAACATGTGAGGGTAATGAGACAATTCCTGAGACTCCAGAAGCTAAGAGAAATTTGTCAGCTGAAGGAGCTAATGCTGATGAAACAGCAAACCCTGTTGAGAAGGAAACTTCTTCATTGGCTGCAGATGCATGCAATAATGGCATGAGAGATGAAGAACTTAGCCCTCGTTTAACTAATTTAATTATAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAAAGAGGACAAACAAGAAACAGGTTTATCTTTCGAGGCTGTATTTCACCTGTTAATCTTCAGGAAGAACAGGATGCTGGCTCATTAAGTTGTAGGGAAGTTGAAAAGGTCATCGTTGAAAGTGGCATTGGTAAGAATGTATGTACTTCTCCTGTCAATGAAACCCGAACCCCTTTGCTTGAGCTGAAGAGTTTCCCAATTGGAAGAGGACGTGTCTTCGTTTCTCAAGCTGACGAAGGGCATTTTCGTATCGCTGACCAAAGCTTCAGCGAAGAATCACATCCAGGTTGTGGTGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAATTGAAGATACTGAAAGCAATGTGAATCAGAAAAGCAGCACTGTTTTTGACTCAAGAGCGAACTTTTTAAGACCATCATCTGCCTCCAATCCCACACGAGATAAGCATGGCCAAGGTAAAAGGAAACCAGTCAATGCGAGAGACTTCATTGAGGAGGAAGCCGAGGTGTCTTCAGATGCATCTGTATCTAATGATGAAGATGTCGAGGATGAAAATTCATTTGACAGTTTCATAGATGACCGAACAACCCTTACAGCGGCCAGTCAGCCTGAAGCTAGTAGGATGGACATGATGGCAATTTACAGGCGTTCATTGCTGAGTCAAACACCGATTAGTGGAGGGCCCAGGTTTTCTGCCACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGTGGTAATTCATCATGCAAGACAGCGAGTCATTTCCAGACAGGACCAACCAGTCACTCAGCTAATCGAACTTCAGAATCAATTGGCATCGACCAGATGACCTCAGAAGCAGTGCCTTCAACCAGTTTTCCAACCGATACAGAGACAGATGTAAGAAGCCGTAAAAGAAGATTGACATTTAATCATTCTGGACACTTTCCAAGTATGAATCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGAATCAGCAGGTGCCAATGCAACTATAGATGTTTTATGTGATGATCAATTTTACAATGATATTGATCTTGATGAGTTGGAGGCGCAAGCTACTTCGTTTCTAAAACGGAAAATAGACTTGTCAGTTAAGAAGCAAGATACAATCCCTCAATCTCATGAACCAAACCTTGATGTTATTATGTCTCCATCTTTCGACCTTGGTATATAA 3672 0.399 MESNNTPYEIVDDDEGFDWEAAAREIDEVCQMKIDAKTNGNETEKVCQKGKGKGKQSTLDNFVGIAKKETPTVQVQENDAKEEDEEYTCIHNIDTEAAKTWTYPVNVPLRDYQFHITQSALFQNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQKTVQDVIDNLHISKLEYRSETDHDVISYVHDRKIELIQVVAMGQDAVEINNKFLDVIRPIVARLTNIGVIQNRDYRTLSPCVLLEIREKFRQGHMQDHSHINFGDVEGYFGVLITLYYIHKLISSHGIRPAYEMLERKLKQGSFAKFMSKNEGILKAQQLMQQNLSHGAQSPKLSKMLEVLLEHFKTNPQNSRVIIFSNYRESVRDIMDALGGTGDQVRATQFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVLKPEVQYVELSIEKFIPRQKNVKEDHIQISASNDKLTLAEIDLLEKYFHSTGENRCRLSLIAFPHFQTFPSRVHKVEHSCGTLMLIDMMRRLQGLAACPGDSKNSTIQSTLYNGRSFLFLSSTTDNELFSRDTMGRNAESVNCLESLSPMRRSNKLQTKDFVDLTLQDSTYCDMGKHQEETCEGNETIPETPEAKRNLSAEGANADETANPVEKETSSLAADACNNGMRDEELSPRLTNLIISGVVPESPIDERGQTRNRFIFRGCISPVNLQEEQDAGSLSCREVEKVIVESGIGKNVCTSPVNETRTPLLELKSFPIGRGRVFVSQADEGHFRIADQSFSEESHPGCGEMSVSIKPARKFKRLRKIEDTESNVNQKSSTVFDSRANFLRPSSASNPTRDKHGQGKRKPVNARDFIEEEAEVSSDASVSNDEDVEDENSFDSFIDDRTTLTAASQPEASRMDMMAIYRRSLLSQTPISGGPRFSATFSPDNVTMTASIGESGNSSCKTASHFQTGPTSHSANRTSESIGIDQMTSEAVPSTSFPTDTETDVRSRKRRLTFNHSGHFPSMNLEQEFALQSKKESAGANATIDVLCDDQFYNDIDLDELEAQATSFLKRKIDLSVKKQDTIPQSHEPNLDVIMSPSFDLGI 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02942 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 284 IPR014001 -
Car06g02942 1223 MobiDBLite consensus disorder prediction 753 789 - -
Car06g02942 1223 MobiDBLite consensus disorder prediction 998 1014 - -
Car06g02942 1223 MobiDBLite consensus disorder prediction 1073 1098 - -
Car06g02942 1223 CDD FANCM_ID 317 431 - -
Car06g02942 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 443 617 IPR001650 -
Car06g02942 1223 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 16 1187 - -
Car06g02942 1223 MobiDBLite consensus disorder prediction 944 1030 - -
Car06g02942 1223 MobiDBLite consensus disorder prediction 947 973 - -
Car06g02942 1223 CDD SF2_C_FANCM_Hef 441 570 - -
Car06g02942 1223 SMART helicmild6 476 566 IPR001650 -
Car06g02942 1223 MobiDBLite consensus disorder prediction 974 994 - -
Car06g02942 1223 CDD DEXDc_FANCM 107 288 IPR044749 GO:0005524
Car06g02942 1223 Gene3D - 430 594 IPR027417 -
Car06g02942 1223 SMART ultradead3 105 305 IPR014001 -
Car06g02942 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 570 IPR027417 -
Car06g02942 1223 PANTHER FANCONI ANEMIA GROUP M PROTEIN 16 1187 IPR039686 GO:0006281|GO:0043138
Car06g02942 1223 Pfam Type III restriction enzyme, res subunit 122 266 IPR006935 GO:0003677|GO:0005524|GO:0016787
Car06g02942 1223 Pfam Helicase conserved C-terminal domain 448 565 IPR001650 -
Car06g02942 1223 Gene3D - 105 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02942 Car-Chr6 48590627 48621523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02942 398 564 Eukaryotic Initiation Factors Gene Family AT3G13920 27.072 3.00e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02942 K10896 - gmx:100820078 1461.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02942 06 48590627 48621523 Car06g02942 06 48590627 48621523 ECH