Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02932 ATGTTTCCAATGGCTACTAGTCAGATGCAACCGTTCAGTGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGAGGGTGTATGTTGGAGGTCTCCCTCCTACAGCGAACGAGCAGTCTGTTGCTATTTTCTTCAGTCAAGTCATGGCTAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCCGTGGTCAATGTTTACATTAACCATGACAAAAAATTTGCCTTTGTTGAGATGAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTATAACCCTTCTCTAGCCGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGATTAACTCCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGTATTTTTGTAGGTGGACTTCCCTATTACTTTACAGAAACTCAGATCAGGGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTCTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCGGCTCTGAATGGAATTAAGATGGGTGATAAGACTCTTACTGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTGGTGGCTACAAAGGTCGTATGTTTAACTAATGCAGTTTCTCCCGATGAGCTCAAAGAAGATGAGGACTTTGACGAGATTATTGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTAAATGTTGTGATTCCTCGTCCACAACCAGATGGGGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTAGAATATGTGGATATTGAGGGTGCTACAAAAGCTCGTACTGGATTGAATGGGAGAAAATTTGGTGGAAATGAAGTAATAGCTGTTTTCTATCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1101 0.4342 MFPMATSQMQPFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVSPDELKEDEDFDEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYEG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02932 366 Gene3D - 143 248 IPR012677 -
Car06g02932 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 115 IPR000504 GO:0003723
Car06g02932 366 Gene3D - 260 365 IPR012677 -
Car06g02932 366 CDD RRM3_U2AF65 264 352 - -
Car06g02932 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 349 IPR000504 GO:0003723
Car06g02932 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 223 IPR000504 GO:0003723
Car06g02932 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Car06g02932 366 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 12 364 IPR006529 GO:0003723|GO:0005634|GO:0006397
Car06g02932 366 SUPERFAMILY RNA-binding domain, RBD 153 355 IPR035979 GO:0003676
Car06g02932 366 Gene3D - 27 128 IPR012677 -
Car06g02932 366 PANTHER RNA-BINDING PROTEIN 2 365 - -
Car06g02932 366 SUPERFAMILY RNA-binding domain, RBD 18 118 IPR035979 GO:0003676
Car06g02932 366 SMART rrm1_1 153 226 IPR000504 GO:0003723
Car06g02932 366 SMART rrm1_1 266 352 IPR000504 GO:0003723
Car06g02932 366 SMART rrm1_1 33 111 IPR000504 GO:0003723
Car06g02932 366 CDD RRM2_U2AF65 152 228 - -
Car06g02932 366 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 2 365 - -
Car06g02932 366 CDD RRM1_U2AF65 31 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02932 Car-Chr6 48104550 48110611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02932 154 345 Eukaryotic Initiation Factors Gene Family AT1G22760 25.128 5.55e-08 52.8