Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02923 ATGGCAATATCACCTCAAATTTTCCCTACCAGGAAACGACCACCCTCTGAATCGTCGTTTATCTCTCCAACCCTCACCCACTTTAATCTTCTCCACTCTCTTTTACACCTCACCCACCAAATATGTTCCTTTAACGCAGCTCCTTGGTGTCGTTTCCTCTTAAACCGTATTTCCTCTTCCACCATCCGTAAAACGCAGCTCCTTGGTGTCGTTTTTGAAGACCTCATTCGCAATTCCGATTCAACCTCAACTTCAATTTCAGCACCTTTATGTTCTCACTCTTTCGTTCTCTGTCTTGAAGAAATGTACATCGTGCTGCACAGAATTCAAACCCTCGTCGAAGATTGTTCCAACGGAAGCAAATTTTCTATTCTAATGCAAATTGAAACCGTTGCTGATAATTTTCACAAACTCACCGGAGAATTATCGACACTTCTCGATGTTTTCCCTCTTCAAGAGCTTAATCTAAGCGACGACGTTTTGGAACTCATTTTCCTCATCAGAAAACAGTGCTCAGAATCAAAGACACTCCTCGGGGAAGAACAAATCAAACTTCGAAACAACGTCGTTTTTGTTCTCGAAGGGATCAAGAGAGAAATTGTTCCAAATCCAACAAACCTAGCTTCGATTTTCGAAAAATTGGAGATTCGCGATTCTTCAAGCTGCAGAGGTGAGATTGAGAGTCTTCAAGAAGAGATTCAGAATCGAAACGAAGAACAACCAAAATACGAGATCGTGGCTTTGATTGGCCTCGTTCGTTACGCTAAGTGTGTTCTCTTCGGAGCGTCGACGCCGTCAACGGGAACTGAGAGCTTACGGCGGAATCAGTCGTTGGATATGGTGGTTCCATCAGATTACCGGTGTCCGATTAGCCTCGAACTTATGCGGGATCCTGTAGTCGTGGCAACAGGACAGACGTACGATCGTGGTTCCATCAAGCTATGGATGGATTCTGGACACAACACGTGTCCTAAAACAGGTCAAACACTGGCCCACACGGATCTCATTCCAAATCATGCTTTGAGAAACATGATAGCTATGTGGTGCCGCGAGCAAAGAATTCCGTTTGAAGGTGAAACAGTTGCCGTTAAAATAAACGGCGGTGTGACAAATAAAACAGCTTTGGAAGCCACGCGAATGACGGCGTCGTTTTTAATCAACAAGTTGACTAACCCTTCTCTGGTTTTAGATTCTAAATCCATCGAAGACACTAACGCCGTTGTTTACGAGCTCCGTGTGTTAGCGAAAACAGATTCTGAGAGCCGAGCCTGTATAGCCGAAGCTGGAGCCATCCCGCTATTGGTTCCATTCCTAAGCTATGAAAATGGTTTGCAACACCCGAGGCTACAGATTAACGCTGTGACAACGATTTTAAACCTTTCGATTCTGGAATCAAACAAGACAAGAATAATGGAGACAGACGGCGCGTTAAACGGCGTAGCTGATGTTTTACGCTCAGGTGCCACGTGGGAAGCAAAAGCGAACGCAGCAGCTACGGTGTTTAGTTTAACGGGAGTGCCAGCTTTTAGAAAGAGGTTAGGAAGGAAGACACGTGTCGTGAGTGGATTGGTTGAGTTGGCGAAGGGTGGGCCCGAGGGAGCTAAGAGGGATGCGCTTGCAGCGATTTTGAATCTCGCGGCGGATCGTGAGACGGTTGCGAGGTTAGTTGAGAGTGGCGCTGTGGAGATGACGGCGGGGATTATGGCCGTGATGCCGGAGGAGGCTGTAACGATTCTTGAAGCAGTGGTGAAACGTGGAGGATTGGTAGCGGTTGCGGCGGCTTTTGTGGGGATAAAGAAATTGGGGACAGTGTTGAGGGAAGGATCGGAGAGGGCGAGAGAGAGCGCGGCGGCGACACTTGTAACGATGTGTAGGAAAGGAGGATCGGAGATTGTAGGGGAGCTTGCGGCGATTTCCGGCGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTTGGCAGTGTGAGAGGGAGGAGGAAGGCGGCGACGCTGTTGAGGATTCTACGGCGGTGGGCGGCAGGTTTGGATGGTGGTGAAACGGAAGGATTCTCAACAACCACTGCTGTGAGTATCTGA 2073 0.4805 MAISPQIFPTRKRPPSESSFISPTLTHFNLLHSLLHLTHQICSFNAAPWCRFLLNRISSSTIRKTQLLGVVFEDLIRNSDSTSTSISAPLCSHSFVLCLEEMYIVLHRIQTLVEDCSNGSKFSILMQIETVADNFHKLTGELSTLLDVFPLQELNLSDDVLELIFLIRKQCSESKTLLGEEQIKLRNNVVFVLEGIKREIVPNPTNLASIFEKLEIRDSSSCRGEIESLQEEIQNRNEEQPKYEIVALIGLVRYAKCVLFGASTPSTGTESLRRNQSLDMVVPSDYRCPISLELMRDPVVVATGQTYDRGSIKLWMDSGHNTCPKTGQTLAHTDLIPNHALRNMIAMWCREQRIPFEGETVAVKINGGVTNKTALEATRMTASFLINKLTNPSLVLDSKSIEDTNAVVYELRVLAKTDSESRACIAEAGAIPLLVPFLSYENGLQHPRLQINAVTTILNLSILESNKTRIMETDGALNGVADVLRSGATWEAKANAAATVFSLTGVPAFRKRLGRKTRVVSGLVELAKGGPEGAKRDALAAILNLAADRETVARLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVGELAAISGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFSTTTAVSI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02923 690 CDD RING-Ubox_PUB 286 328 IPR045210 -
Car06g02923 690 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 12 682 - -
Car06g02923 690 Pfam U-box domain 282 353 IPR003613 GO:0004842|GO:0016567
Car06g02923 690 Coils Coil 219 239 - -
Car06g02923 690 SMART arm_5 493 547 IPR000225 GO:0005515
Car06g02923 690 SMART arm_5 418 462 IPR000225 GO:0005515
Car06g02923 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 357 IPR013083 -
Car06g02923 690 Gene3D - 379 596 IPR011989 -
Car06g02923 690 SUPERFAMILY ARM repeat 395 667 IPR016024 -
Car06g02923 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 475 IPR000225 GO:0005515
Car06g02923 690 SUPERFAMILY RING/U-box 277 355 - -
Car06g02923 690 PANTHER U BOX DOMAIN-CONTAINING 12 682 - -
Car06g02923 690 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Car06g02923 690 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02923 Car-Chr6 47478413 47480728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02923 9 673 U-box Gene Family AT5G01830 56.036 0.0 693
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02923 06 47478413 47480728 Car06g02923 06 47478413 47480728 ECH