Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02904 ATGCAACCAAGGGCAAGTACTGGAGATGGTTTCCGTTTTAGCGCATCTAGTACGCCTAGCAATTCAAGTGGAGGATCTGAAGGAGATGACTTAGAGTCACCAGGTGATGTTTACATATGGGGAGAGGTTTTTGCAGATGGGGTTTCTTCTAAGACCAATGTGTTGATCCCGAAGCTTTTAGAGACAAATCTTGTTCTTGATGTTCGTCATATTGAATCTGGTGCGCGCCACCTTGCTATAGTTAACAAGAAAGGAGAGGTTTTCACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGTATTGATAACGATTTTGGCAAGCCTCGTCTAGTTGAGTTTCTTGCAGATACTATGTTGAATATTGTTGCCTGTGGGGAGTTTCATACATGTGCTGTGTCTAAATATGATGATTTCTTCACCTGGGGTGATGGTATACATAATGTTGGACTTCTTGGCCATGGTACTGAGGCTAGTCACTGGATACCAAAGAGTGTCAATGGTGCTTTAGATGGACTTCAAGTTGTATCTGTTGCCTGTGGCACATGGCATTCAGCATTGGCAACCTCAAATGGAAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTTTTAGGCCATGGTGATGAAGAGAGTGTATGGTATCCAAAGGAAGTACAATTATTAAGTGGACTGAAGACTATTAAGGTTGCTTGTGGTGTATGGCACACTGCAGCTATTATTGAAGTTGTTTTTCAATCTGGTTCAAATGTTTCATCATGGAAACTCTTCACATGGGGCGATGGTGACAAACATCGTTTAGGCCACGGAAACAAGGAAAACTACCTGCAACCGACCCGTGTCTCCCCCCTTATTGAATATAATTTCCAACAGATAGCATGTGGGCACACCATGACTGTTGCTCTCACTACATCTGGTCATGTCTTTACAATGGGAAGCACTGAAAATGGTCAATTAGGAAATCCAAATTCTGCTGGAAAAGTACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAATTTGTTGAGGAAATATCATGTGGATCACATCATATTGCGGTTTTGACATCTAGAAGTGAACTATATACATGGGGAAAAGGTTCTAATGGAAGACTAGGACATGGTGATATAGATCATAGAAAATCTCCTACACTAGTTGTAGCCTTAAAAGATAGGCATGTAAAACATATCTCATGTGGCTCAAACTTTACATCTTGTATATGTATCCATAAATGGGTCAATGGAACTGATCAATCAGTTTGCTTTGGTTGTAGACAAGCATTTGGTTTAACAAGAAAAAGACATAATTGTTATAATTGCGGATTGATTTTTTGCCATAATTGTAGTTCTAAAAAGGCAATCAAAGCTGCAATGGCTCCAACATCAGAAAAACCTCATCGTGTTTGTGATATTTGTTATACGAAGCTTAAAGTTGTTGACACCAATGATCCTTCCAAGTTTAATGGAAAAGCTACTCCTACTCCTTCGCCTTCTCATTGTTACACAACTAGCAGAGAAAGATTAGACCAGGGTACTTTAAGGTCTACAAAAACTCTCTTCTCTTCCATTACTGAACCAATGAAATACCTTGAAATAAGGAATAATAAGACTGGAACCCAATATGATTCTACTTCTTTTGTCAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTAAAAGATATTGCATTTCCAAGTTCACTGAGTTCGACTCAAAGTATTTTAAAACCTACTACACCTCCTAGTTCATCACAAAGTACCACATGCCCATACAAATATTTATCAAGCCCTCCAACACCTCCTGCCGGTCCAAGAATTTCTGGTGGTCTTTTCAATAGTTTGAGAAGGTTAACTGATGTTTTGAACCAACGGATCTTAGATTTACAAAGCCAAATTCGATGTTTGGAGCAGATAAATGAAGTGAAAGATGTGAAAATTAATAAGCTTCAGAAAAAGGCTACTGAAGCTATTGCTTTGGCTGCAGTGGAATCTTCACATCATAGAGAAGCAAAAGAAGTTATTGAATCTACTAATCATAAGTTGAAGGACATAATTGAGAAGCTACCAAAAGAAATTCCAGAAAGCAATATATTGAGTGCTATACAAACTAAAGCTGAAGATTTTCTAAAAGAAGTTTCAGAATCTGAAACATCAGAGTTGGAGTCCAAGCAACAAAATGTACAAGACATGTCTGCAACAGATATCAGACTAGTAGAAAATGCCGACCTTGTAGAAAATATCATTAATGACTCATCTAATCTGGAAAATATCAGACTAGTAGAAAATGCCGACCTTGTAGAAGTTGACTCTGGTCTAGATGGATCGAAGTTAGAGTCTTTGCAACAGAATTCACTTGATATAAATTCCTCAAATAGTGGCACGTTTGAACTGCAAGATCATAAACTAGAACAAAATTCTGACGTTCAAGGAATTGAGCATAGTCAAAATGGAGAAAATTTCTGGGAAGAAATTAATAAACCAATGTTGGAGTCAGAGCAACATAATTCTCCTGATATATCTACCTCAGATGGTGATACTTCTAAACTGCAAGAACACATAGATGAAAAAATTGATGAGATTAATGAAGGAGTTGAAAAATCTGAGGCTGGAATAAATGTTCTTCAAGAAAGTAATGGATCATCTGTATCTAGTGTTGGAGAAGTGATGTCCCGTCAAAACTTAGAAAATGATTCAAGATCACTTGACACATCAAGATCTGGGAGATTACAAGAAACACAGGTCATTGAAAAATTTGAGCCTGGTGTTTATGTGATACTCATGCTACGAGTTGATGGAATCAAAATTTTTAAACGAGTTAAATTCAGTAAGCGAAGGTTTACTGAGAATCAAGCAGAAGAATGGTGGAGCCAAAATAAAATTCGGGTTCTTAGAAAATATCTCCAACACATCAAAACTGGATCTTCTAACATTACACAACATATTAAAGAAAAT 2946 0.3764 MQPRASTGDGFRFSASSTPSNSSGGSEGDDLESPGDVYIWGEVFADGVSSKTNVLIPKLLETNLVLDVRHIESGARHLAIVNKKGEVFTWGEESGGRLGHGIDNDFGKPRLVEFLADTMLNIVACGEFHTCAVSKYDDFFTWGDGIHNVGLLGHGTEASHWIPKSVNGALDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDEESVWYPKEVQLLSGLKTIKVACGVWHTAAIIEVVFQSGSNVSSWKLFTWGDGDKHRLGHGNKENYLQPTRVSPLIEYNFQQIACGHTMTVALTTSGHVFTMGSTENGQLGNPNSAGKVPTLVQDKLLGEFVEEISCGSHHIAVLTSRSELYTWGKGSNGRLGHGDIDHRKSPTLVVALKDRHVKHISCGSNFTSCICIHKWVNGTDQSVCFGCRQAFGLTRKRHNCYNCGLIFCHNCSSKKAIKAAMAPTSEKPHRVCDICYTKLKVVDTNDPSKFNGKATPTPSPSHCYTTSRERLDQGTLRSTKTLFSSITEPMKYLEIRNNKTGTQYDSTSFVRASLVPSLLQLKDIAFPSSLSSTQSILKPTTPPSSSQSTTCPYKYLSSPPTPPAGPRISGGLFNSLRRLTDVLNQRILDLQSQIRCLEQINEVKDVKINKLQKKATEAIALAAVESSHHREAKEVIESTNHKLKDIIEKLPKEIPESNILSAIQTKAEDFLKEVSESETSELESKQQNVQDMSATDIRLVENADLVENIINDSSNLENIRLVENADLVEVDSGLDGSKLESLQQNSLDINSSNSGTFELQDHKLEQNSDVQGIEHSQNGENFWEEINKPMLESEQHNSPDISTSDGDTSKLQEHIDEKIDEINEGVEKSEAGINVLQESNGSSVSSVGEVMSRQNLENDSRSLDTSRSGRLQETQVIEKFEPGVYVILMLRVDGIKIFKRVKFSKRRFTENQAEEWWSQNKIRVLRKYLQHIKTGSSNITQHIKEN 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02904 982 Gene3D - 251 411 IPR009091 -
Car06g02904 982 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 344 354 IPR000408 -
Car06g02904 982 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Car06g02904 982 Coils Coil 665 685 - -
Car06g02904 982 SUPERFAMILY RCC1/BLIP-II 33 411 IPR009091 -
Car06g02904 982 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Car06g02904 982 Pfam Transcription factor regulating root and shoot growth via Pin3 910 964 IPR013591 -
Car06g02904 982 MobiDBLite consensus disorder prediction 1 28 - -
Car06g02904 982 MobiDBLite consensus disorder prediction 1 31 - -
Car06g02904 982 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Car06g02904 982 SUPERFAMILY FYVE/PHD zinc finger 410 477 IPR011011 -
Car06g02904 982 Gene3D - 14 250 IPR009091 -
Car06g02904 982 MobiDBLite consensus disorder prediction 483 502 - -
Car06g02904 982 Pfam FYVE zinc finger 410 475 IPR000306 GO:0046872
Car06g02904 982 MobiDBLite consensus disorder prediction 568 587 - -
Car06g02904 982 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Car06g02904 982 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 827 969 - -
Car06g02904 982 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 857 - -
Car06g02904 982 SMART fyve_4 408 477 IPR000306 GO:0046872
Car06g02904 982 MobiDBLite consensus disorder prediction 484 502 - -
Car06g02904 982 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 827 969 - -
Car06g02904 982 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 857 - -
Car06g02904 982 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Car06g02904 982 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Car06g02904 982 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Car06g02904 982 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Car06g02904 982 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Car06g02904 982 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Car06g02904 982 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Car06g02904 982 Pfam Regulator of chromosome condensation (RCC1) repeat 359 406 IPR000408 -
Car06g02904 982 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Car06g02904 982 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Car06g02904 982 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Car06g02904 982 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Car06g02904 982 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Car06g02904 982 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Car06g02904 982 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Car06g02904 982 ProSiteProfiles BRX domain profile. 910 965 IPR013591 -
Car06g02904 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 487 IPR013083 -
Car06g02904 982 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02904 Car-Chr6 46404215 46425546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02904 909 965 Major Intrinsic Protein MIP AT1G31880 42.105 1.24e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02904 - - mtr:MTR_4g029410 1313.9