Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02884 ATGAGAATGTTTAATGGCATAAACCTGACAAAGAAAAAGAAGTCAAGGTtatatatatatatatatattattatGGAGCTTGATTTGAATCACGAGCCTTTGGACCAAATTAGTACTTCAGTAGTTGAATTTGATTCTGTATTGGAAGAGCTAGAATCCGCGGAGGTACATATACGAAACCGAATCAGACACCTTGAAGCCATAACTTCCAGAGCGAGGCAGCATCAGAGGTTGCCGCAGACGCGCTCTCAGATTCAGATAACCAACTTTACAGGAGAAGTAGGAACACCAGATGACGAGGAAGGTGGTGAAGAAGGAAGGGAGCATCACCGTGTTGAGGAAGGAATAGTTGAAAGTGGGAAAGGGGCAAAAAGGAAAAGTGCTCATTTAGTCGCTAAAGCTTTAGGGATGGAAGAGATGGATGATGGTAAGGTGGAGGAAGAGAGCACTGGAAATTTTTTTGATTGTAATATATGTCTGGACAATGCAAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGCCATGTTTCTATCAGTTATCATATGCTTATTCAAAAGCAAAGGAATGTCCTGTTTGTAAAGGAGAAGTCACTGAAACAGGCATTATTCCGATTTATGGGAATGGAAGTGCCGGCGGTGATTGTCAGTTGGAAATGGAAGAAGCCGGTTTGAGAGTTCCTCCCCGACCTAGGGCACCTAGAGTTCAGAGTATTAGACAAAAGTTCATAAGCCAAGGATCATCTTCTTCATCTGTTGTCCAAAGAATTCGACGGTTTCAGTTTCATAACCATATTGGTGGATTTGCTGAGCAAGTTCAGTTAGAAAGCATCAATGCTACAATAGAGAGAAATAATGCTTTGCTCATTCAATCTCGCATGCAGATAGAAAATAATCAACATTCTGGTTCTCATCAGGCTTCAAGGTTGCCGGTGCAAGAAGATCCTTCATTTTCCTCCCTTTCATCAGCTTTGGACACTGCAATAGAGACTGTAGAAAGATTAGTTCAGGGCCTTGAATCATATATCAATGGTCACCAAATAGGAGGAAGCATACAGTTAAATCCTCGTCCTGTTAGTAGAAATTCAACTTTTAGTGTTGCTGATACAAACCGGTCAGAGATTCATGATCAAGAAGTTGCTGCTGTGACCAATTCTGTAGCTTCAGCAGCTTCTGTGTCTCCTTTAAATAGGAATGTGGACAATATGGCTGTTATAGGTTCAGAAATTCAGACAACCGATAGAAACGTACAGATTAGTCCATTAGACCCTTCGTCATCGAATGGTAGAAGAAGAAATGGTGTTTCAAGCGAACCAAGAAGAAGAAGAAGATTGAGATGA 1347 0.4076 MRMFNGINLTKKKKSRLYIYIYIIMELDLNHEPLDQISTSVVEFDSVLEELESAEVHIRNRIRHLEAITSRARQHQRLPQTRSQIQITNFTGEVGTPDDEEGGEEGREHHRVEEGIVESGKGAKRKSAHLVAKALGMEEMDDGKVEEESTGNFFDCNICLDNARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTETGIIPIYGNGSAGGDCQLEMEEAGLRVPPRPRAPRVQSIRQKFISQGSSSSSVVQRIRRFQFHNHIGGFAEQVQLESINATIERNNALLIQSRMQIENNQHSGSHQASRLPVQEDPSFSSLSSALDTAIETVERLVQGLESYINGHQIGGSIQLNPRPVSRNSTFSVADTNRSEIHDQEVAAVTNSVASAASVSPLNRNVDNMAVIGSEIQTTDRNVQISPLDPSSSNGRRRNGVSSEPRRRRRLR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02884 448 MobiDBLite consensus disorder prediction 102 124 - -
Car06g02884 448 Pfam Zinc finger, C3HC4 type (RING finger) 155 202 - -
Car06g02884 448 MobiDBLite consensus disorder prediction 417 435 - -
Car06g02884 448 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 29 370 - -
Car06g02884 448 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Car06g02884 448 MobiDBLite consensus disorder prediction 417 448 - -
Car06g02884 448 MobiDBLite consensus disorder prediction 91 124 - -
Car06g02884 448 SMART ring_2 156 196 IPR001841 -
Car06g02884 448 Coils Coil 48 68 - -
Car06g02884 448 CDD RING-HC_AtRMA_like 154 198 - -
Car06g02884 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 210 IPR013083 -
Car06g02884 448 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 29 370 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car06g02884 448 SUPERFAMILY RING/U-box 151 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02884 Car-Chr6 45675998 45678689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02884 112 263 C3H Transcription Factor Family AT3G58030 42.857 9.76e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02884 K10666 - gmx:100794016 360.533