Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02882 ATGGAAAGAGAGTTTGAAAAAGGGTACATAAAGAAAGGACCATGGAGTAGTGAAGAAGATGAAGTGTTATTAGAACATGTTAAGAAATATGGTTCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTTTGCCTCGAACTGGAAAATCTTGTCGATTAAGATGGGTTAACAAGCTTAGACCAAACTTGAAAACAGGGTGCAAGTTTTCAGCCGAGGAGGAAAGCGTGGTGATTGAGTTACAGAAGCAATTTGGGAACAAATGGGCCAAAATTGCTGCATGTTTGGAAGGGAGAACAGACAATGATGTGAAGAACTTTTGGAGTAGCAGGAGAAAAAGGTTGGAGAGGACATTGGCAAGGACACCATCACCTCCATTTAAGCAGCAGAAAAACAAAGGAAAAGATATGCTTATTCTTAATAATAATCAAGTAAAAGTTGAAAAGGTTCCTGAACGTGGATCCAATAAGCTGGAGGAAAACCTAACTTACCCCATTTCTTATATGGGAAACAAAGAGGTATTCAATATGATCAACCTTTCAGATTTAACAAAATCAAACTACCAAAATATAGAAAATGACCTTAATACAGTTGAGGTTGAAGTCACTCCACTTCACACAGTACCATCATTTGAGTCTTCATCAGGCTACAACTTTCCACTGCTCCCTGAATCACAAATGGACTTTTCACTATTTCCAGAGTGCCAAAACCTTGTTCAAGAGCCATTTGATTCCAATTTTATGGACATGTTTGAGCAGGAAAAATGTTCAGATTGTGTGTGGAGTCAGAAGCTTGAGACCAAGTTGCCAACTCTTGGATTGGAAGGAAATTCTCAGAGTACAAATTCAAATTGTTTCTTTAAGGACTTCCCAACTGAGATTTTTGAATACTTTGAGGATATTTCAACTTAA 909 0.3795 MEREFEKGYIKKGPWSSEEDEVLLEHVKKYGSRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEESVVIELQKQFGNKWAKIAACLEGRTDNDVKNFWSSRRKRLERTLARTPSPPFKQQKNKGKDMLILNNNQVKVEKVPERGSNKLEENLTYPISYMGNKEVFNMINLSDLTKSNYQNIENDLNTVEVEVTPLHTVPSFESSSGYNFPLLPESQMDFSLFPECQNLVQEPFDSNFMDMFEQEKCSDCVWSQKLETKLPTLGLEGNSQSTNSNCFFKDFPTEIFEYFEDIST 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02882 302 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Car06g02882 302 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Car06g02882 302 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Car06g02882 302 Gene3D - 5 65 - -
Car06g02882 302 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Car06g02882 302 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Car06g02882 302 Gene3D - 67 138 - -
Car06g02882 302 SMART sant 11 61 IPR001005 -
Car06g02882 302 SMART sant 65 113 IPR001005 -
Car06g02882 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Car06g02882 302 PANTHER TRANSCRIPTION FACTOR DUO1 1 301 - -
Car06g02882 302 CDD SANT 68 107 IPR001005 -
Car06g02882 302 CDD SANT 14 59 IPR001005 -
Car06g02882 302 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Car06g02882 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02882 Car-Chr6 45653098 45655274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02882 4 302 MYB Transcription Factor Family AT3G60460 39.091 3.42e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g02882 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02882 K09422 - gmx:100793689 416.001