Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02880 ATGATGAGATCTTTCTCCGTTCCACACAACAATGCCATTTCCACGTCTGATTTGGGGTTGAAGAAAGAATTGAGAGAGATGCTGCCTATTATTGTATACAAGGAAAGCTTCTCTGTCAAAGATACACAATGTTCAGTATGTCTTTTGGACTACCAACCAGAGGACAGACTCCAACAGATACCCGCATGTGGCCATACGTTTCACATGAGCTGCATTGATCTTTGGCTTGCCAGCCACAACACCTGCCCTCTTTGCCGTTTGTCTCTACTAACTACTGCTAAATCTGTGACAGAAACATCGGATATGCAGGCGACGAGCAATGAACAAATGCAGATGCTGCAAAGCAATGTAGAAACACTAGCCATGGAAATCTCTGACTCAAGATCTACAAGGCATCAAGAAACCAATGTAATCCAGAATGTCACTGGAGAAGTTGCGATCAGTGCTCACCGGATTGATGTTGAAGGCGAAAATGTGCAAAACAATCAATAG 492 0.435 MMRSFSVPHNNAISTSDLGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLASHNTCPLCRLSLLTTAKSVTETSDMQATSNEQMQMLQSNVETLAMEISDSRSTRHQETNVIQNVTGEVAISAHRIDVEGENVQNNQ 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02880 163 SUPERFAMILY RING/U-box 28 92 - -
Car06g02880 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 139 - -
Car06g02880 163 ProSiteProfiles Zinc finger RING-type profile. 44 86 IPR001841 -
Car06g02880 163 Pfam Ring finger domain 43 86 IPR001841 -
Car06g02880 163 PANTHER RING-H2 FINGER PROTEIN ATL13-RELATED 12 139 - -
Car06g02880 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 93 IPR013083 -
Car06g02880 163 CDD RING-H2_EL5_like 43 86 - -
Car06g02880 163 SMART ring_2 44 85 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02880 Car-Chr6 45482179 45486780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02880 7 90 C3H Transcription Factor Family AT4G10160 73.810 4.50e-46 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02880 K19039 - gmx:100794211 232.261