Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02857 ATGATTGTTGGGAAGAAAGGGACTGGTGGTGGTGGGAAGGCTAAACCTATGTTTGTTCAGTTTGTGTTGGAGCCTTTGTGGCAGGTTTGTCAGGGTGCACTTGAAGGTGATAAAGGGTTAATTGAGAAGGTTATTAGGTCTTTTAATTTGCAGGTTCCGGCGCGAGAGTTGAGGAATAAGGATGCTAAGGTTGTGTTTCAATCTGTTATGAGCCGTTGGCTTCAGCTTTCGGATGCTATTTTGTCGATGGTGGTTAAGTGTTTGCCTGATCCTGTAGCTGCGCAAGGGTCTCGGATATCACGGTTGATTCCGCAGGGTGAGGCTCCTTGTGTTGCGCTTGTGGCAAATATGTTTGCACTTCTTGTTAGAATGCTTCCTCCTTCTCAAGTGGGGGAGGTTGTATGGAGTTTTGGTGAGGAAGGAGATGGTGAATCTGATGAGTGTTTTTTGGCATTTGCTAGGATATTTAGTGGTGTTTTGTTGATTGGGCAGAGAGTTTTTGTGCTTTCTGCTTTGTATGATCCGTTGAAAGGGGAATCGATGCAAAAACATATTCAGGAAGCTGAATTGAAATCCATGTATTTGATGATGGGACAGGGGTTGAAAGTAGTGAAATCTGCGACAACCCTTTCTTCGACTAGGAACTGTTGGCCTTTTTCGAGTATGGCATTTCAAGTTGCATGGATTTTGAGGGTTGCAATTGAGCCATCTGACCCTGCAGATATGGGTTCACTGCTCAAAGGCTTGAGGCTTTTGAATCATGCAGATCCGTTTGTTGAGGTCAAGGTTTCTGCTAGAGGAGAACACGTTCTTGCTGCGGCTGGTGAAGTTCATCTTGAAAGATGCATAAAGGATTTGAAGGATAGGTTTGCTAAAGTGATGAAACTTCTACCTTCTTTGACAAAGGGGCTCGACGAAAGTGTTGATTTACTTGGAGATATCGTTGGAGTAAAGTTAGCGCAGACAGTTAAAAGTTTAGAAACTCAGAGAACAAATATTCTCGAAGAAAATGAGAATCTGGCTGAAGTGCTTAAAAAACGTATAATGGATGCCATCGAGAGCGATGTTTTGGATAGGAATGAGAATGATGAAGACCATGCTGAGAAATGTAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGACCAAGTTACGTTGGTGCTAACGTTCTCTTCACTTCTGATATTAAAGCCGAAAGTATCTATAGCTCTGTTCTAATACGTGGTTCTTCTCAACTATCTGAAAAATTAGGTTTCGTGGCTGATTCCGGTGACAGTAACTTGGTTTCAGATACATCTTCAAATGAGAGCCAAGTGTTGTACATGGATGCCGCACTTCTCGAAAGTAATGTTATAACTGAGTTTCAACTAGCCACTTCAGCTGGACCTTTATGTGATGACCCCATGTGGGGTTTAACATTTGTGATCGAGGCACGTATATCTCCATCTTCAGGGCAATATGATGAATTTGAAACGCATCAACAATCCGACCAGTATGGCATCTTTGCAGGGCAGGTTATTGCAACAGTCAAAGATGCTTGTAGGGCAGCTGTGCTAAAGAATAAACCAAAGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACCCTTACTGAGTATTTGGGTCCCATGTATGGTGTACTTTCCCGAAGACGGGCTCGGATTTTGAAGGAAGAGATGCAGGAAGGTTCGCCGTTATTCACTATGCATGCATATGTTCTTGTTTCTAAGAGCTTTGGTTTTACTGATGAGCGTAGAAGTCGAACTTCTGGCGCTGCAAGTGCACTTCTTGTGCTAAGCCATTGGGAAGCACTACTTGAGGATCCTTTCTTTTTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCCAGTGTTCTTCCAAATACAGCTAGAAAGTTGATTGACACAGTCAAACGGCATAAGGGTTTTCCTGTGGAGGAAAAGCCCGACCAAATCCGCCACTTCCATGCCTGTTGTGATTGTGgcctgagtgaagGTCAAGCCTGCATTGAAGTCAGAAATGTTCTCTAA 2049 0.427 MIVGKKGTGGGGKAKPMFVQFVLEPLWQVCQGALEGDKGLIEKVIRSFNLQVPARELRNKDAKVVFQSVMSRWLQLSDAILSMVVKCLPDPVAAQGSRISRLIPQGEAPCVALVANMFALLVRMLPPSQVGEVVWSFGEEGDGESDECFLAFARIFSGVLLIGQRVFVLSALYDPLKGESMQKHIQEAELKSMYLMMGQGLKVVKSATTLSSTRNCWPFSSMAFQVAWILRVAIEPSDPADMGSLLKGLRLLNHADPFVEVKVSARGEHVLAAAGEVHLERCIKDLKDRFAKVMKLLPSLTKGLDESVDLLGDIVGVKLAQTVKSLETQRTNILEENENLAEVLKKRIMDAIESDVLDRNENDEDHAEKCRLKWLKLLRRIWALGPSYVGANVLFTSDIKAESIYSSVLIRGSSQLSEKLGFVADSGDSNLVSDTSSNESQVLYMDAALLESNVITEFQLATSAGPLCDDPMWGLTFVIEARISPSSGQYDEFETHQQSDQYGIFAGQVIATVKDACRAAVLKNKPKLVEAMYFCELNTLTEYLGPMYGVLSRRRARILKEEMQEGSPLFTMHAYVLVSKSFGFTDERRSRTSGAASALLVLSHWEALLEDPFFLPKTEEEIEEFGDGSSVLPNTARKLIDTVKRHKGFPVEEKPDQIRHFHACCDCGLSEGQACIEVRNVL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02857 682 SUPERFAMILY EF-G C-terminal domain-like 530 628 IPR035647 -
Car06g02857 682 Gene3D - 526 662 - -
Car06g02857 682 CDD eEF2_snRNP_like_C 530 608 - -
Car06g02857 682 CDD EF2_snRNP_III 229 293 - -
Car06g02857 682 PANTHER - 108 293 - -
Car06g02857 682 PANTHER - 293 654 - -
Car06g02857 682 SMART EFG_C_a 527 616 IPR000640 -
Car06g02857 682 Gene3D Yeast translation eEF2 (G' domain) 1 74 - -
Car06g02857 682 Gene3D Elongation Factor G (Translational Gtpase), domain 3 229 297 - -
Car06g02857 682 Pfam Elongation factor G C-terminus 528 608 IPR000640 -
Car06g02857 682 SUPERFAMILY Translation proteins 107 220 IPR009000 -
Car06g02857 682 SUPERFAMILY Ribosomal protein S5 domain 2-like 341 528 IPR020568 -
Car06g02857 682 Coils Coil 323 354 - -
Car06g02857 682 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 293 654 - -
Car06g02857 682 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 7 105 - -
Car06g02857 682 PANTHER - 7 105 - -
Car06g02857 682 Gene3D Translation factors 91 213 - -
Car06g02857 682 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 108 293 - -
Car06g02857 682 CDD aeEF2_snRNP_like_IV 341 534 - -
Car06g02857 682 SUPERFAMILY EF-G C-terminal domain-like 230 293 IPR035647 -
Car06g02857 682 Gene3D - 323 524 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02857 Car-Chr6 44202771 44211564 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02857 1 654 Eukaryotic Initiation Factors Gene Family AT3G22980 55.059 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02857 K14536 - pvu:PHAVU_003G003900g 935.636