Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02834 ATGGCTTTGATTGTGGATCCACAATCAAACTTTAAACACTTTTGTAAAATCTGTAAAAAAGGGTTTGGTTGTGGAAGAGCTTTAGGAGGGCACATGAGAGCTCATGGTATAGGCGATGAAACGGGTAACATGGAGGACGATGATCCGGAAGGTGATTGGGAAGACCGACTGGGCAGCAATGTTGAACCCCCAAGTAACAAACGAATGTATGCGTTAAGGACAAATCCTAATAAGCTAAAAAGTTGTAGGTCGTGTGAGCATTGTGGCAAGGAATTTTTCTCTTGGAAATCTTTTTTAGAACATGGAAAATGCACTTCCGAAGATGCAGAGGAGTCCCCTGTATCTTCTCCGGAATCTGACGCCATTGCAGATGATTGCGAGGGTGCAGATGGTCGTACAGGATTTGGTTGGTCTAAAAGAAAGAGATCATTGAGAACCAAAGTTGGTAGCTACAATTATAATTATAATAATTGTCCTTCAAGTGAAGAAGAAGACTTAGCCAATTGTTTAATGATGTTGTCGAATGCTATTGTTAACCGCCACGAGGTTGAACCGGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAATCCTATGAATTTTATTACACCATTGTCTTATAGAGTCCCCTATGACAACAACAATAACAGCAAAGCCAAAGGTGTTGCAAAAGGGTTGTTTGAATGCAAAGCATGCAAAAAAGTTTTCAACTCACACCAAGCATTAGGTGGTCATAGAGCAAGTCACAAAAAAGTGAAGGGGTGTTTTGCAGCAAGATTAGATAATAACCTTGAAGATAGTCTTGTTGAGGATGATGTCATAACACATGAAGAATTCTTCCCTTCAAAATCTAACTCAACCCTACAATTTGATCAACATGGTAGCTCAAACAACCCTACATTAATGGCTTCTTCTTCTAAGAGAAAATCAAAAGTACATGAATGCTCAATTTGTCATAGGAGTTTTTCTTCTGGACAAGCATTAGGTGGTCACAAGAGATGTCATTGGATTACATCAAATGCACCTGACACATCAACATTGGCAAGATTTCAACAATTTCAAGATCAAATGGAACAAATACCAAAATTTGATAACTCTTCTGAACCAATTGATCTTAAACTTGACCTAAATCTTCCCGCTCCTACTAATACACAAATTTACATGCAACCATGGGGTGCAAGTGGAAATGCAACAAAGGAAAACAGCATTAAAGAGAATAACAATAGCCAATGTATGAGTCAACAAAATCAGAACAACAACATTAACCTAGTTGATCAAAACAATGAAAATATTGACGAGAATAACAAAAACAATAACCCAATCAATGCTTTGGTACAAAATGTTGATAACGAAGCTGATAGTGAGGTTAAGTTGGCGAAATTAAGTGAGTTAAAGGATGTCATTAACATTAGTGGAAGTTCTTCACCATGGTTGCAAGTTGGTATTGGTCCAACAACAGATGTGAGGAATGATACATACATCACCACTATATGCCACATACAATCTCTCCTCTCCGATTCCACAGATCCTGTTAAAGACACACAAGGACTCATTCTTTTCAGCTCTTTTCTCCATCTTCATCAGGTAAATTTTGTCATAAAGGGTTATAGAGTTAAGGTGTCGAGTCACCTCTTACAAAAAGGTTTTCCAACCAAGTACACATTTTGGGACATGCATGGAGAAAAGCATGTGCAATTCAATGAGGAATCAGTGAGCCAAGTAAAAAAGCATTAG 1743 0.381 MALIVDPQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETGNMEDDDPEGDWEDRLGSNVEPPSNKRMYALRTNPNKLKSCRSCEHCGKEFFSWKSFLEHGKCTSEDAEESPVSSPESDAIADDCEGADGRTGFGWSKRKRSLRTKVGSYNYNYNNCPSSEEEDLANCLMMLSNAIVNRHEVEPEESCASASKDEERRNPMNFITPLSYRVPYDNNNNSKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNNLEDSLVEDDVITHEEFFPSKSNSTLQFDQHGSSNNPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDQMEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYMQPWGASGNATKENSIKENNNSQCMSQQNQNNNINLVDQNNENIDENNKNNNPINALVQNVDNEADSEVKLAKLSELKDVINISGSSSPWLQVGIGPTTDVRNDTYITTICHIQSLLSDSTDPVKDTQGLILFSSFLHLHQVNFVIKGYRVKVSSHLLQKGFPTKYTFWDMHGEKHVQFNEESVSQVKKH 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02834 580 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Car06g02834 580 MobiDBLite consensus disorder prediction 107 127 - -
Car06g02834 580 PANTHER OS02G0659100 PROTEIN 1 494 - -
Car06g02834 580 Pfam C2H2-type zinc finger 315 340 - -
Car06g02834 580 Pfam C2H2-type zinc finger 13 35 - -
Car06g02834 580 Pfam C2H2-type zinc finger 230 254 - -
Car06g02834 580 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Car06g02834 580 SUPERFAMILY beta-beta-alpha zinc fingers 13 102 IPR036236 -
Car06g02834 580 Gene3D Classic Zinc Finger 11 104 - -
Car06g02834 580 SUPERFAMILY beta-beta-alpha zinc fingers 229 338 IPR036236 -
Car06g02834 580 MobiDBLite consensus disorder prediction 393 417 - -
Car06g02834 580 Gene3D Classic Zinc Finger 228 338 - -
Car06g02834 580 SMART c2h2final6 230 252 IPR013087 -
Car06g02834 580 SMART c2h2final6 83 103 IPR013087 -
Car06g02834 580 SMART c2h2final6 13 35 IPR013087 -
Car06g02834 580 SMART c2h2final6 316 338 IPR013087 -
Car06g02834 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 338 IPR013087 -
Car06g02834 580 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Car06g02834 580 MobiDBLite consensus disorder prediction 37 68 - -
Car06g02834 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Car06g02834 580 PANTHER OS02G0659100 PROTEIN 1 494 - -
Car06g02834 580 MobiDBLite consensus disorder prediction 288 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02834 Car-Chr6 42206913 42213101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02834 139 399 C2H2 Transcription Factor Family AT1G02040 34.559 1.14e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g02834 zf-C2H2_6 1.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02834 - - ahf:112720137 694.115