LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g02819	ATGTCGAATCACGACAATTTCACACACGATGTTTTTCTGAGTTTCAGAGGCGCAACTCGCTACAACTTCACCGGTAATCTCTATAAGGCTCTTGTGAATCACAGAATCAATGTTTTCAGAGACGATGAAAACCTCAAAATCGGGGACGAAATCGAACCTTCTCTTCTACAAGCAATAGAAGCTTCTAGAGTCTCGATTGTTGTGCTGTGTCAAGACTATGCTTCTTCAACTTGGTGCCTTGACGAACTTGTTAAGATCGTTGACGGTTATGAAAAGAAAGGAAAATCAGTTTATGTTGTATTTTATAAGGTGGAACCTTCTGATGTTAGGCATCAGAGAAATAGTTATGAAATTGATATGATGAAACATGAAGAGAGATTTGGAAAGCAATCAGAGAAGGTTAAAGAATGGAAGTCGGCTTTGAACAGAGTATGTGCTCTTAGTGGACTGCATTACAAGGGCGACATCTATGAATATGAGTTTATAGAGAATATTGTTAGAGACATCTCAGCTAAGCTACCTCCCACGCCTTTACAAATAATCAAACATGAAGTCGGACTCGACTCTCGTTTTGAACAGGTGAAATCTATTATTGATATTGATTCTGATGATGTTTTCATGTTTGGAATTCATGGAGCTGGTGGAATAGGAAAAACCACATTAGCCTTGTATATATATAACAAGATAAGTATTCGATTTGAAGCTGCAAGTTTTCTTTATAATATTAGAGAAAAATCAAATCAAAGCACTATGGGCCTGGAGGATCTACAAATGAGACTTCTGAATGACATGGGTGTGGGGACACAAACCATGATGGGAAGCACGTTTAGAGGATGCTCTGAAATAAAACGCAAGCTTTCCCACAAAAGAGTTCTTCTGATACTAGATGATATTGATTCAGTAAAACAATTGCAATCACTAGCGGGAGGACATGATTGGTTTGGTTCGGGTAGCATAATCATTGTAACAACAAGAGATACCGAAGTTCTTCATAAGCATGATATTAAAATCAAAAGATATAAACTCGAAGAGCTAAATTATATTGAATCCGTTGAACTCTTTTGTCGGTATGCATTTAATATGAGCACACCTGCAGAAGGATTTGAAAATGTCTCTTCTTGTGCAATAAGTTATGCAAAGGGTATTCCATTGGCTTTAAGTGTAATAGGATCTAATTTGAATGGTAAGAGCATAGAGGAATGTAATATTTTACTGCAGAAATATAGAAAGGTTCCAAATGCTGATATTCAAGGTGCATTAGAAATAAGCTACAAATGCCTATCTGACTTTGACAAGAAAATTTTCCTGGACATTGCTTGTTTTTTCAAAGGGGAAAGATGGGATTATGTTAAAAGGATACTAGAGGCTTGTGATTTCTACCCAGTTATAAGCGTATTTTTGAGTAAATGTCTCATAACTATTGATGAAAATGGTTGTTTAGAAATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTCGGAAGAAATCGAAATCAAACCCCGGTGAACGCAGTAGGTTATGGTATCACAAAGAAGTTCTTGACGTGCTTAAAGGAGATTTGGGAAGCACTACAATTGAAGGAATAATGCTTCATCCTCCAAAACAAGAAAAAGTAGATCATTGGGCTTATACTGCCTTTGAGAAGATGAAAAACCTCAGAATTTTGATTGTTAGGAATACATTGTTTTCATCAGGACCTAGTTTTTTGCCGAATAGTTTACGGGTGCTGGATTGGAAGAGCTACCCATCGCATAATTTTCTACCAGATTTTCATCCTTACAGAATTGTTGATTTCAACTTACCTCATAGCTCAATCATATTGAAAAAGCCTTTTCAGAAATTTGAGGATTTAACATTCATCAATCTCTCCCATAGTCAATCCATAACTCAAATTCCCGATTTGTCTGGAGCTAAAAGCTTAAGAGTGTTAAGAGTTGATGAATGCCATAAACTAGTAAAGTTTGATAAATCCATTGGACTTATGCCTCATCTGGTGTATTTAAGTGCTTCTCGGTGCACTAAGCTAAAGATTTTTGTGCCAACAATGTATTTGCCCTCCCTTCAAGTGATTTCTTTTAACTTGTGCAAAAATTTTGAACACTTCCCACATATAATGCAAAAGATGGATTCGCCATTAAAGATTCACATGAGAAATACTAGTATTAAGGAGTTTCCAGAGTCCATTGGTAACCTTACAGGGCTTGAGTTTATAGACATGTCATTTTGCAAAGGGCTCAAAGATCTATCTAGTAGATTTTTTTTGCTTCCAAAACTTATCACTTTGAAAATTGATGGATGTTGTGAAGTTGGAGAATCATTCCAAAGGTTCAAAGAGGGCCATTTAGTGGAAAACGTGTATCCAAATTTAGAAACACTTCATTTTAGCGAAGCTAATCTATCATTTAAAGACATTCATGCCATTATTGAAAATTTTCCAAAATTGGAAGACTTTAAAATGTCACATAATGGATTTGAAATTCTCCCAAAATGCATTAGAGGATCGTTGCACTTGAAAAATGTTGATGTTAGCTTTTGCAAGAATCTTAGAGAAGTTCCAGAACTTCCATTAAGTATTCAGAAAATAGATGCAACACATTGTCAATCCTTAACTTTAGAGGCATCAAGTCTACTTTGGTCAAAGGTATCACAAGAAATCCAAAGAATACAAGTTGTAATGCCGATGCTAAAAGAGCAGATTCCAGAATGGTTTGACTTTATATCCACCCAAGAGATTCCACTTTTATTGGCTCGTCGGAAGTTTCCCGTTTTTGCTTTAGCATTAGTGTTTCAGGAAGAAAAAAAGGCAGGACATTTTCCTAAATTAAATGATGGTATAGAATTATCGAGCGGAGTCGTTAGCCTCCATTTGTTCATTAATGCCAAAGAAATTTGTGTCAGGGATTGCAATTACTTCTATGTTGGGTCAAATCATGTGCTATTGTGTGACCTACGAGTTTTGTTCAGTGATGAAGAGTGGAAGGACCTTGATGCAAATCTTGGAGATGACTGGAAAGCCATTCAAGTTCAATATGATTCAAGCTTGATTCTGACTAATTGGGGAGTTTATATGTATAAGAAAGAAACAAACATGGATGATATCCAATTCATAAATCCTGATTGCAGTTCCTTTTCCTACACGCCATCATCATTTTTGGTTCCAAAAACATCTCCTGAGCATAAATTTAAATATATGCTGAAAAATATGAGTTCAAGATGCATGTTTAGTGTGTATTTTCAGTTAATAGTAAAAGAAAAAAGACATGTCAACTTTTCAGAAGTGGTTTCTCGGGCTCTGGGGAATTCAAAGGATGACAGTATATGGAAAGCTTCCTCCTCTTCCTTTGGGTTAAGTCTAAAGCAAGACCAAGAAGATTCTATAGAGGATGTGGTTAAGGTATTAGAGATTATAAAAGAGAATCTAGAGTTTGCACCGAAACACATCGTTGATTCATATGCAAAAGTTCTTCCAATTGGACTCAGTTTTGTTGAACTATTATTGAGGGCACAATTAGAATTAGCAAAGGAAAGCTTGGACTTAAAATGTCCTATTGTTCTAGTGTATACTAATAAACGAGGGTATACACACCGACACTTTTGGGGACTTGTGGAGATAAAACTGGGAGATCCACTTTACAAACCAATGTTGAGGAAGATAGACCAAATTTTGTGGGGACATCTGACGAGCAATGGACCCTCGAGCTTTAGACTGAAAAAAACCATTCTTGAATTGAAATGCCAACGTCCAATGGAAGAGGAAACTTCAAGCTCTAGCCCTAACGAATCCTTGGATGAAGGAAACCATAATCCTGAAATTGAAGCGTTTTTGAGGAAGGTAGAACAAGATGTTATGAGCTTGAATAAATCTTATGGGAAAATGGAGGCATCTATTGTTCAAACTGACGAGTCATTTGATGAGTTCATCTACCGAACAGTAATTACTTACGGAAGATTTGCATCACCTTGCAAGTTGAAGATCACAACTTATGGAAAGATAAGGACAGAGGACGATTATTTTCTCATTCCGAGGGCATGTTTTTGGTGTTTGAGCATGTTTCTTTTTGTCCTAATGGCATACCTCTTTATTTCTATAAGACGTGTGTGCCTTTGGTTTTATAGGATACCACTAACACAAAAGATAACAGTGTTGAGTTTGTTATGTAAATTATTGTTCTTTCTTTTTATGGATATTCCTGCCATGTTTTATTTGATCATGATATCTCTCATGATATATAATGGATACAAACTAGGTCAGTGGAAATGGCATGACCTTGTGGGGCTCCGTCGCATTTGGTATGACCTTATGGGGTATATAAGGGACCAAGTTGCAAATAGTGAAAAAATGAGCCAAGGCAAATTGGGTCAACAAAACACTCTAGAGGAATTACAGCAAGGTAAATTGGATATTACAACATTAGATACCGTCGGGGAATTCCTGGAAACTAAGAAAGGACTCAAGAAAAGAATTCAAAGGATTAGGTTGGACGATTTAGACTAA	4500	0.3638	MSNHDNFTHDVFLSFRGATRYNFTGNLYKALVNHRINVFRDDENLKIGDEIEPSLLQAIEASRVSIVVLCQDYASSTWCLDELVKIVDGYEKKGKSVYVVFYKVEPSDVRHQRNSYEIDMMKHEERFGKQSEKVKEWKSALNRVCALSGLHYKGDIYEYEFIENIVRDISAKLPPTPLQIIKHEVGLDSRFEQVKSIIDIDSDDVFMFGIHGAGGIGKTTLALYIYNKISIRFEAASFLYNIREKSNQSTMGLEDLQMRLLNDMGVGTQTMMGSTFRGCSEIKRKLSHKRVLLILDDIDSVKQLQSLAGGHDWFGSGSIIIVTTRDTEVLHKHDIKIKRYKLEELNYIESVELFCRYAFNMSTPAEGFENVSSCAISYAKGIPLALSVIGSNLNGKSIEECNILLQKYRKVPNADIQGALEISYKCLSDFDKKIFLDIACFFKGERWDYVKRILEACDFYPVISVFLSKCLITIDENGCLEMHDLIQDMGREIVRKKSKSNPGERSRLWYHKEVLDVLKGDLGSTTIEGIMLHPPKQEKVDHWAYTAFEKMKNLRILIVRNTLFSSGPSFLPNSLRVLDWKSYPSHNFLPDFHPYRIVDFNLPHSSIILKKPFQKFEDLTFINLSHSQSITQIPDLSGAKSLRVLRVDECHKLVKFDKSIGLMPHLVYLSASRCTKLKIFVPTMYLPSLQVISFNLCKNFEHFPHIMQKMDSPLKIHMRNTSIKEFPESIGNLTGLEFIDMSFCKGLKDLSSRFFLLPKLITLKIDGCCEVGESFQRFKEGHLVENVYPNLETLHFSEANLSFKDIHAIIENFPKLEDFKMSHNGFEILPKCIRGSLHLKNVDVSFCKNLREVPELPLSIQKIDATHCQSLTLEASSLLWSKVSQEIQRIQVVMPMLKEQIPEWFDFISTQEIPLLLARRKFPVFALALVFQEEKKAGHFPKLNDGIELSSGVVSLHLFINAKEICVRDCNYFYVGSNHVLLCDLRVLFSDEEWKDLDANLGDDWKAIQVQYDSSLILTNWGVYMYKKETNMDDIQFINPDCSSFSYTPSSFLVPKTSPEHKFKYMLKNMSSRCMFSVYFQLIVKEKRHVNFSEVVSRALGNSKDDSIWKASSSSFGLSLKQDQEDSIEDVVKVLEIIKENLEFAPKHIVDSYAKVLPIGLSFVELLLRAQLELAKESLDLKCPIVLVYTNKRGYTHRHFWGLVEIKLGDPLYKPMLRKIDQILWGHLTSNGPSSFRLKKTILELKCQRPMEEETSSSSPNESLDEGNHNPEIEAFLRKVEQDVMSLNKSYGKMEASIVQTDESFDEFIYRTVITYGRFASPCKLKITTYGKIRTEDDYFLIPRACFWCLSMFLFVLMAYLFISIRRVCLWFYRIPLTQKITVLSLLCKLLFFLFMDIPAMFYLIMISLMIYNGYKLGQWKWHDLVGLRRIWYDLMGYIRDQVANSEKMSQGKLGQQNTLEELQQGKLDITTLDTVGEFLETKKGLKKRIQRIRLDDLD	1499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g02819	1499	Pfam	TIR domain	9	179	IPR000157	GO:0007165
	Car06g02819	1499	SMART	till_3	8	147	IPR000157	GO:0007165
	Car06g02819	1499	Gene3D	Ribonuclease Inhibitor	717	893	IPR032675	-
	Car06g02819	1499	Gene3D	Ribonuclease Inhibitor	542	716	IPR032675	-
	Car06g02819	1499	Pfam	NB-ARC domain	193	399	IPR002182	GO:0043531
	Car06g02819	1499	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	1116	IPR044974	GO:0006952
	Car06g02819	1499	SUPERFAMILY	L domain-like	541	874	-	-
	Car06g02819	1499	Gene3D	-	173	338	IPR027417	-
	Car06g02819	1499	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	149	IPR035897	-
	Car06g02819	1499	Gene3D	-	7	172	IPR035897	-
	Car06g02819	1499	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	14	1116	-	-
	Car06g02819	1499	ProSiteProfiles	TIR domain profile.	7	173	IPR000157	GO:0007165
	Car06g02819	1499	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	438	IPR027417	-
	Car06g02819	1499	Gene3D	-	344	428	IPR042197	-
	Car06g02819	1499	SUPERFAMILY	"Winged helix" DNA-binding domain	415	519	IPR036390	-
	Car06g02819	1499	PRINTS	Disease resistance protein signature	207	222	-	-
	Car06g02819	1499	PRINTS	Disease resistance protein signature	285	299	-	-
	Car06g02819	1499	PRINTS	Disease resistance protein signature	379	393	-	-
	Car06g02819	1499	PRINTS	Disease resistance protein signature	731	747	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g02819	Car-Chr6	41284839	41296823	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g02819	56	780	WRKY Transcription Factor Family	AT4G12020	31.007	3.04e-76	278

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g02819	-		-	cam:101493067	3001.46