Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02783 ATGAAAATAACTCCTACCACTTCTGATACTGAGGTTTCTGCACTTGAAAAAAAAAATCTGGGACGTGTCGTCCAAATAATAGGTCCGGTACTAGATGTTGTTTTTCCACCAGGGAAGATGCCTAATATTTACAACGCTCTGATAGTTCAAGGTCGAGATACTGTTGGCCAACAAATTAACGTAACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAATTAGAGCTGTAGCTATGAGTGCTACAGATGGGTTAAAGAGGGGGATGGAAGTTATTGACACGGGAGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGGCGAATTTTCAACGTACTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGTATTAAAGTAGTAGATCTTTTAGCTCCTTATCGGCGTGGCGGAAAAATAGGACTTTTTGGTGGAGCTGGGGTAGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAACGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTCAATGAACAAGACGTACTTTTATTTATCGACAATATCTTCCGCTTTGTCCAAGCAGGATCCGAAGTATCCGCCTTATTGGGCCGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCTACTACAGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAAGAAACTTTACAACGTTACAAAGAACTTCAGGATATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAACCATTTTTCGTAGCAGAAGTATTTACAGGTTCGCCAGGGAAATATGTCGCGCTAGAAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATAGTCTTCCCGAACAAGCGTTTTATTTGGTGGGTAATATCGATGAAGCTACTGCGAAGGCT 1461 0.4093 MKITPTTSDTEVSALEKKNLGRVVQIIGPVLDVVFPPGKMPNIYNALIVQGRDTVGQQINVTCEVQQLLGNNRIRAVAMSATDGLKRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVALEETIRGFKLILSGELDSLPEQAFYLVGNIDEATAKA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02783 487 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 486 - -
Car06g02783 487 Gene3D - 98 374 IPR027417 -
Car06g02783 487 Gene3D - 18 97 - -
Car06g02783 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Car06g02783 487 Gene3D - 375 487 IPR024034 -
Car06g02783 487 PANTHER ATP SYNTHASE 1 486 - -
Car06g02783 487 CDD F1-ATPase_beta 97 377 - -
Car06g02783 487 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Car06g02783 487 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Car06g02783 487 TIGRFAM atpD: ATP synthase F1, beta subunit 20 487 IPR005722 GO:0015986|GO:0045261|GO:0046933
Car06g02783 487 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 486 - -
Car06g02783 487 SMART AAA_5 164 356 IPR003593 -
Car06g02783 487 Hamap ATP synthase subunit beta [atpB]. 18 487 IPR005722 GO:0015986|GO:0045261|GO:0046933
Car06g02783 487 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Car06g02783 487 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Car06g02783 487 CDD ATP-synt_F1_beta_C 379 486 - -
Car06g02783 487 CDD ATP-synt_F1_beta_N 19 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02783 Car-Chr6 39809839 39811299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02783 6 429 Primary Pumps ATPases(2) AT1G20260 26.957 1.82e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02783 K02112 - mnt:24286633 914.064