LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g02772	ATGATAGCTTTTCGTATACTTCTAACACTTTTGGTTCCTTTTCTATTTGCCTCTTTAGTTTCATGTTATTCCATGAATGAAGTTAAACTTTGGTGTAATCAAACTCCTAACCCTGAACCTTGTGAGTATTTCTTGAGCAATAACCCGAGTTACCAACACAAACTCATCGAACAAAAAGCTGATTTCTTCAAGCTTTCATTGGAACTTGCTCAAGAACGAGCACTCAAAGGCCATGCAAACACTCTTTCATTAGGCTCAAAATGTAATAACCCACGTGAAAAATCAGCTTGGGCTGACTGTGTTGAGTTATATGAACAAACCATCCTTAAGCTCAACAAAACCCTAGACACTAACACAAAGTGTTCTCAAGTTGATGCTCAAACATGGCTAAGCACTGCTCTCACCAACCTTGAGACATGCAAAGCTGGATTCTATGAACTTGGTGTTCAAGACTATGTTCTTCCTTTAATGTCCAACAATGTTACTAAGTTGTTAAGTAACACTTTGGCTCTAAACAAAGTTCAATATCAAGAACCAGGCTACAAAAATGGGTTCCCAAAATGGGTCAAGCAAGGTGATAGAAAGCTATTGCAAACATCTTCTCCGTCCTCTCAAGCTAATGTAGTCGTATCGAAAGATGGATCCGGAAAATACACAACAATTGGTGCAGCTGTGAACGCTGCCCCAAAGAATAATAAGGGAAGGTATGTGATACATGTGAAGACCGGTGTGTACAATGAACAAGTTGAGATCAAGGCAAATAATATTATGTTGGTAGGAGATGGTATTGGGAAGACTATAATCACCGGTAGCAAAAGTGTCGGAGGGGGAACTACAACCTTCCGATCAGCGACCGTTGCTGTTGTTGGTGATGGATTTATTGCACAAGATATCACATTTAGGAACACTGCTGGTGCAAACAACCATCAAGCGGTTGCATTGCGTTCTGGATCAGACTTATCTGTGTTTTACAGATGTAGCTTTGAAGGTTATCAAGACACACTATATGTGCATTCAGATAGACAATTCTATAAGGAATGTAACATTTATGGCACAGTTGACTTCATATTTGGTAACGCTGCTGCAGTGTTCCAAAATTGTAATATATTTGCAAGAAACCCCCCAAACAAAGTCAACACAATCACCGCACAAGGTAGAACTGATCCAAACCAAAACACTGGCATTTCTATTCACAATTCTAGGGTTACAGCTGCTTCTGATTTGAAACCTGTTCAAAATTCTGTTAAGACTTATCTTGGAAGGCCATGGAAGCAATATTCAAGGACAGTTTTTATGAAGACTTCTCTTGATAGTTTAATCCATCCAGCTGGTTGGTTAGAATGGAGTGGTAATTTTGCATTAAGTACTTTATATTATGGAGAGTACATGAACACAGGTCTTGGTTCTTCTACAAGAAATCGAGTTAAGTGGCAAGGTTATCATGTCATAACTAGAGCTTCTGAAGCTTCAAAGTTCACCGTTGGAAATTTTATAGCTGGAAATTCATGGTTACCTTCAACCAGTGTTCCTTTTACATCTACTCTTTGA	1548	0.3889	MIAFRILLTLLVPFLFASLVSCYSMNEVKLWCNQTPNPEPCEYFLSNNPSYQHKLIEQKADFFKLSLELAQERALKGHANTLSLGSKCNNPREKSAWADCVELYEQTILKLNKTLDTNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPGYKNGFPKWVKQGDRKLLQTSSPSSQANVVVSKDGSGKYTTIGAAVNAAPKNNKGRYVIHVKTGVYNEQVEIKANNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGANNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQNSVKTYLGRPWKQYSRTVFMKTSLDSLIHPAGWLEWSGNFALSTLYYGEYMNTGLGSSTRNRVKWQGYHVITRASEASKFTVGNFIAGNSWLPSTSVPFTSTL	515

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g02772	515	SMART	PMEI_2	23	171	IPR006501	GO:0004857
	Car06g02772	515	PANTHER	PECTINESTERASE	7	514	-	-
	Car06g02772	515	PANTHER	PECTINESTERASE	7	514	-	-
	Car06g02772	515	SMART	complete	240	418	IPR006633	-
	Car06g02772	515	ProSitePatterns	Pectinesterase signature 1.	232	251	IPR018040	-
	Car06g02772	515	Gene3D	Invertase/pectin methylesterase inhibitor family protein	23	174	IPR035513	-
	Car06g02772	515	Pfam	Pectinesterase	207	501	IPR000070	GO:0030599\|GO:0042545
	Car06g02772	515	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	22	-	-
	Car06g02772	515	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	27	174	IPR035513	-
	Car06g02772	515	SUPERFAMILY	Pectin lyase-like	202	514	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g02772	Car-Chr6	39662310	39664248	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g02772	1	515	Carbohydrate Esterase	AT2G45220	67.181	0.0	718

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g02772	K01051		-	gmx:100783428	900.968

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