Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02770 ATGGCTTCATTACCTATGCTAACAACTCTCTTAGTTGTTTCCTTTCTTTTCTCCTGTATTGTTTCTAGCCACTCATTAAGTTCCATAGAATCATGGTGTAGCAAAACACCTTACCCTCAACCATGTGAGTACTATTTAAGTAACCAGGGTTACAACCAAACAATAAAAAATAAATCCGATTTTTTCAAAGTTTCACTTAAAATCGCCATAGAGAGAGCAAAAATGGGCCAACAAAACACAAACTCACTAGGCCCAAAATGCCGTAACCCAAAAGAAAAAGCTGCTTGGGATGATTGTATTGAACTCTATCACTACACAATCAAAAAGCTCAACGAAACAATAGGCACAAAGTGCACACAAATTCAATCTCAAACTTGGCTTAGCACAGCACTCACAAATCTTGAGACATGCAAAAACGGGTTTTATGACCTTGGTGTCACAAACTATGTTTTACCTTTATTGTCTAATAATAATATAACTAAATTGTTAAGTAACACTTTGTCTCTTAACAAGGTTCCTTACCAACAACCAAATTACAAAGATGGATTTCCAACATGGGTTAAACCCGGCGATAGGAAACTTCTTCAGACATCTTCGGCCGCCTCGAAGGCTAACGTTGTTGTCGCTAAAGATGGATCTGGCAAGTTTACGACGGTAAACGCGGCCGTAAGTGCCGCCCCAAGTAGTAGTAGTGGAAGGTATGTGATATATGTCAAGAGTGGCGTGTACAATGAACAAGTTGACATCAAAGCAAAGAATATTATGTTGGTTGGTGATGGTATTGGTAAAACCATAATCACAGGTAGCAAGAGTGTTGGAGGTGGCACCACTACCTTCCGTTCAGCAACTGTTTCTGCCGTTGGAGATGGATTTATGGCTCAAGACATCACATTCAGAAACACAGCTGGAGCTGCAAACCACCAAGCTGTTGCATTCCGTTCTGGCTCAGATCTATCAGTATTTTACAAATGTAGCTTTGAAGGTTATCAAGACACACTGTATGTTCACTCCGAAAGACAATTTTACAGAGAATGTAACATTTATGGCACGGTTGATTTCATCTTTGGCAATGCAGCCGTAGTTTTGCAAAATTGCAACATTTTTGCAAGAAATCCACCACAAAAAACTATCACCGTCACCGCTCAAGGAAGAACAGATCCAAATCAAAACACTGGAATCATAATCCATAATTCTAAAGTATCACCTGCATCAGACCTAAATCCTAGTTCTGTTAAATCTTATCTCGGTAGGCCTTGGCAAAAATATTCAAGAACGGTTTTCATGGACACTGTTCTTGATAGTTTCATAAACCCTGCTGGTTGGTTGGAATGGGATGGTAATTTTGCTTTAGATACTTTATATTATGCTGAATATGCTAACACAGGTTCAGGTTCCTCTACTTCAAACAGAGTCAAATGGAAAGGTTACCATGTTCTTACTAGTGCATCACAAGCTTCACCGTTCACTGTTGGGAATTTTATTGCTGGTAACTCATGGTTACCAAAGACGGGTGTGCCTTTCACCTCAGGACTCTAA 1536 0.3952 MASLPMLTTLLVVSFLFSCIVSSHSLSSIESWCSKTPYPQPCEYYLSNQGYNQTIKNKSDFFKVSLKIAIERAKMGQQNTNSLGPKCRNPKEKAAWDDCIELYHYTIKKLNETIGTKCTQIQSQTWLSTALTNLETCKNGFYDLGVTNYVLPLLSNNNITKLLSNTLSLNKVPYQQPNYKDGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKFTTVNAAVSAAPSSSSGRYVIYVKSGVYNEQVDIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVSAVGDGFMAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQNCNIFARNPPQKTITVTAQGRTDPNQNTGIIIHNSKVSPASDLNPSSVKSYLGRPWQKYSRTVFMDTVLDSFINPAGWLEWDGNFALDTLYYAEYANTGSGSSTSNRVKWKGYHVLTSASQASPFTVGNFIAGNSWLPKTGVPFTSGL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02770 511 SUPERFAMILY Pectin lyase-like 199 510 IPR011050 -
Car06g02770 511 PANTHER PECTINESTERASE 4 510 - -
Car06g02770 511 Gene3D - 199 511 IPR012334 -
Car06g02770 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 172 IPR035513 -
Car06g02770 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 172 IPR035513 -
Car06g02770 511 CDD PMEI-like_3 32 171 - -
Car06g02770 511 ProSitePatterns Pectinesterase signature 1. 230 249 IPR018040 -
Car06g02770 511 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 172 IPR006501 GO:0004857
Car06g02770 511 PANTHER PECTINESTERASE 4 510 - -
Car06g02770 511 SMART PMEI_2 24 169 IPR006501 GO:0004857
Car06g02770 511 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Car06g02770 511 Pfam Pectinesterase 205 497 IPR000070 GO:0030599|GO:0042545
Car06g02770 511 Pfam Plant invertase/pectin methylesterase inhibitor 28 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02770 Car-Chr6 39493835 39498582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02770 1 511 Carbohydrate Esterase AT2G45220 64.535 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02770 K01051 - gmx:100794948 829.706