Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02738 ATGGAAAAAAAGTGCAAACTTTGTTTTAGAAGTTTCTCTAATGGAAGAGCATTGGGTGGACATATGAGATCACACGTGATGAACCTACCAATTCCTCCAAAACCAAAAGGGTCACCACCACCAACGATCCAACTCAGTTTCGAAGCCGAGTCAGCTTCATCTCCTTCATCATCTTCTTCCTATGGCCTAAGAGATAAACCAAAGAGAAGCTTTCTATTCACAGATCCCAATCAATTCATCGAGTCGAGTTCCGAAATTCTCCAAGACAGAGAGAGCGAAACCGAGTCGTCAAAAAATCCAACTCGGCCACGATCCAAACGAGTCAAGAAACTCGACACCGTGAAACCGAATGAGTCGGTACTGAGTTCCGCTTCGGATATAACCACTGAAGAAGACATCGCTTTATGTCTCATGTTGTTGTCTCGTGACAGTAACAACAATTGGaaaacaaaaccacaaacacaaccaaagcatcaagaatacgaagaagaaaaacaaaaaagtgatgaaaatgaagacgaagaagaagaaagtgaagctgaacctgaggaAATTAAACCATTTAAGGCGAAAAATACGAAGAAATTACGAGCAAGGTATAAATGTGACACGTGTAATAAAATGTTTCGTTCATATCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAAATTAAGTTGATTAATGATGAAATTGGTGTTGATTCAGAAGAAGAGAAAATTAATATTAATAATATTAATGGTGAAAGTAAAATTCATGAATGTCCAGTTTGTTACAGAGTTTTTAATTCAGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGTTGGATCAACAACAATAGCGACGGTTACAACAAACTCTGAGGTACGAAGTTCCGTGAAGTTTGGAAACAGTTTCATAGATCTAAATCTTCCTGCTCCTACGgatgatgatgatgatgatgTTAGCCAAATTGAAGGTTCTGCTGTTTCCGATGCAGAATTTGTCTAA 999 0.3433 MEKKCKLCFRSFSNGRALGGHMRSHVMNLPIPPKPKGSPPPTIQLSFEAESASSPSSSSSYGLRDKPKRSFLFTDPNQFIESSSEILQDRESETESSKNPTRPRSKRVKKLDTVKPNESVLSSASDITTEEDIALCLMLLSRDSNNNWKTKPQTQPKHQEYEEEKQKSDENEDEEEESEAEPEEIKPFKAKNTKKLRARYKCDTCNKMFRSYQALGGHRASHKKIKLINDEIGVDSEEEKININNINGESKIHECPVCYRVFNSGQALGGHKRTHGIVGSTTIATVTTNSEVRSSVKFGNSFIDLNLPAPTDDDDDDVSQIEGSAVSDAEFV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02738 332 MobiDBLite consensus disorder prediction 24 119 - -
Car06g02738 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 275 IPR013087 -
Car06g02738 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Car06g02738 332 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Car06g02738 332 SUPERFAMILY beta-beta-alpha zinc fingers 199 275 IPR036236 -
Car06g02738 332 MobiDBLite consensus disorder prediction 166 181 - -
Car06g02738 332 Coils Coil 157 181 - -
Car06g02738 332 Gene3D Classic Zinc Finger 197 275 - -
Car06g02738 332 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 332 IPR044303 GO:0006355
Car06g02738 332 SMART c2h2final6 253 275 IPR013087 -
Car06g02738 332 SMART c2h2final6 3 25 IPR013087 -
Car06g02738 332 SMART c2h2final6 200 222 IPR013087 -
Car06g02738 332 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Car06g02738 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Car06g02738 332 MobiDBLite consensus disorder prediction 86 114 - -
Car06g02738 332 MobiDBLite consensus disorder prediction 145 190 - -
Car06g02738 332 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 2 332 - -
Car06g02738 332 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Car06g02738 332 MobiDBLite consensus disorder prediction 44 64 - -
Car06g02738 332 Pfam C2H2-type zinc finger 199 224 - -
Car06g02738 332 Pfam C2H2-type zinc finger 253 275 - -
Car06g02738 332 Pfam C2H2-type zinc finger 4 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02738 Car-Chr6 37333809 37334957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02738 4 318 C2H2 Transcription Factor Family AT3G60580 44.444 2.42e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g02738 zf-C2H2_6 4.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02738 - - aprc:113850450 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00833 03 44649511 44651025 Car06g02738 06 37333809 37334957 PCT