Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02695 ATGGAAAGTAACCAAATCAAAGATGAAGAACTTGTTGTAAACGATCAACAAGAAATCTTCGAATCCtttgtttgctgcgtttgtttGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGTCACGTATCATGTTTCTGGTGTGTCCATAAATCCATGAATAGGTCGCGCGAATCCCATTGTCCAATATGTAGGCATGGATACTATCACTTTCCAACAATCTGTGAAATGCTTCACTTTTTGCTTGTTAAGACATATCCTGCAGCTTACAAGAGAAGGGAAAATCAGACACTTGTGGAAGAACAGAAAATGGGTTTTTTCTCTCCTGAGTTAGATGCTTGTACCCGTACTACCATCAATCTGGCATCTAACTCATGCAGCACGGAATCTTTTGAAAGTACAGAGCGATCAAGGTCTGCAAATCATAAAGGAGATGAAGGCATCATCTATTCTAAATACTCTTCTGACAAGAAACCTCAAACTATAGTGACTGCTTCTGTTGAAGGAAAAAAATTGCCTCAAAGTGAGCACAATCAGCAACCAAAAATATTAGTTGCAGATTTGATGTGTCCCACATGCAAGCAAATGCTCGTTCATCCTGTTGTTCTGAATTGTGGTCATGTATACTGTGAGACTTGTATCACTGACTTATCTGATGAGAGGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCCAGAGGAGTTCCAAAAGTTTGTTTGGCTCTTGACCAATTTTTAGAGGAGCAATTTCCAGAAGAGTACACACATAGAAAGGATGCAATTCAACTTAGCCAAATCAAAGTCCAACCAGAGACCACATCTTCTGGTTCATTGCATAACGACAATGGCGAAAAGATAGCTTGGTGGTCTCATCCTGGATTGACAGTTCACATAGCAGTTGGTTGTGATTTTTGTGGGATGTTCCCAATAGTTGGGGACAGATATAGATGTGATGATTGTAAAGAAGAGATTGGCTTTGATCTTTGTGGTGATTGCTATAAGAACCGCTCAAAGCGTCCGGGACGATTTAATCAGCAGCACACCCCTGACCACAATTTAAAGCTTATACAATGTCGACGGACACTAAATAACAGACAGTGGATTGGACAAGTTTCGTCGGATTTGGTAATTATAGACGATGATCCTGCTTCCTCTACTGATGAAGATGAAAACCAAAGTGACTCTGAAACCACCAACTGA 1200 0.3975 MESNQIKDEELVVNDQQEIFESFVCCVCLDLLYKPIVLSCGHVSCFWCVHKSMNRSRESHCPICRHGYYHFPTICEMLHFLLVKTYPAAYKRRENQTLVEEQKMGFFSPELDACTRTTINLASNSCSTESFESTERSRSANHKGDEGIIYSKYSSDKKPQTIVTASVEGKKLPQSEHNQQPKILVADLMCPTCKQMLVHPVVLNCGHVYCETCITDLSDERLRCQVCQSPHPRGVPKVCLALDQFLEEQFPEEYTHRKDAIQLSQIKVQPETTSSGSLHNDNGEKIAWWSHPGLTVHIAVGCDFCGMFPIVGDRYRCDDCKEEIGFDLCGDCYKNRSKRPGRFNQQHTPDHNLKLIQCRRTLNNRQWIGQVSSDLVIIDDDPASSTDEDENQSDSETTN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02695 399 MobiDBLite consensus disorder prediction 381 399 - -
Car06g02695 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 257 IPR013083 -
Car06g02695 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 6 388 - -
Car06g02695 399 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
Car06g02695 399 Pfam Zinc finger, C3HC4 type (RING finger) 24 66 - -
Car06g02695 399 Pfam Zinc finger, C3HC4 type (RING finger) 187 230 - -
Car06g02695 399 SUPERFAMILY RING/U-box 288 356 - -
Car06g02695 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 107 IPR013083 -
Car06g02695 399 SUPERFAMILY RING/U-box 183 250 - -
Car06g02695 399 Pfam Zinc finger, ZZ type 297 338 IPR000433 GO:0008270
Car06g02695 399 ProSiteProfiles Zinc finger ZZ-type profile. 297 361 IPR000433 GO:0008270
Car06g02695 399 CDD RING-HC 25 64 - -
Car06g02695 399 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
Car06g02695 399 PANTHER UNCHARACTERIZED 6 388 - -
Car06g02695 399 SUPERFAMILY RING/U-box 10 76 - -
Car06g02695 399 SMART ring_2 25 64 IPR001841 -
Car06g02695 399 SMART ring_2 190 227 IPR001841 -
Car06g02695 399 ProSitePatterns Zinc finger ZZ-type signature. 302 332 IPR000433 GO:0008270
Car06g02695 399 MobiDBLite consensus disorder prediction 379 399 - -
Car06g02695 399 Gene3D - 293 356 IPR043145 -
Car06g02695 399 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02695 Car-Chr6 35674777 35689492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02695 12 65 C3H Transcription Factor Family AT1G74990 36.364 4.33e-08 50.1