Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02659 ATGTCTGACGAATGTGTATCTCGTTTCTTAACTGTTTCTCTTTTTGTCGTGCTTGGTTGGAACAAAGAGGATTCCTATTCACAAAGACAAAAAGTTGGTGGTTGTTCGGATGAGATGTATGAAGTACAATGGGAAAAGATTGCGGGACCATTGGTGGAGGTTCCTCGTGTTGGTCAGAGGGTTTTCTATTTCCCTCAAGGGCACATGGAACAATTAGAGGCTTCTACTAATCAGGAACTAAATCAGAGAATCCCTTTGTTGAAACTTCCTAATAAGATCCTTTGTCGCGTCGTGAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATAACTTTGGTACCAGAATCTAATGTAAGAATACCAACCTTTCATGCGTTCTGCAAGATCTTAACAGCCTCCGATACCAGCACTCACGGTGGCTTCTCCGTTCTCAGGAAACATGCCACAGAATGCCTTCCTCCTATGGACATGTCTCAACCAACACCAACTCAAGAACTGGTTGCCAAAGATCTTCATGGGTATGAATGGCGGTTTAAACATATATTTAGAGGTCAACCGCGTAGACACCTTCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAACGGTTAGTCGCAGGAGATACCTTTGTGTTTTTGAGAGGGGAAAATGGAGAATTACGTGTTGGAGTGAGACGTCTTGCTCGTCAATCAAGTAGCATGCCATCATCTGTGATTTCTAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCCCATGCTGTTGCAACTCAGACTCTTTTCGTTGTATATTATAAGCCAAGAACGAGTCAGTTCATCGTAAGCGTGAACAAATACTTGGCAGCTATCAGTAACAAGTTTACTGTTGGCATGAGGTTTAAGATGAGGTTCGAGGGCGACGATTCTGCGGAGTCTGAGAAAAGATTTTCTGGTACCATAGTTGGAGTAGAGGATATTTCTCCCCATTGGGCTAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTGCATCTATTACAAGACCTGACAGGGTTTCACCGTGGGAGATAGAACCGTTTGTTTCTTCGGCTTCTACACCCTCGGTTCAACCTACAGCTGCAAAGTCTAAACGGCCTCGACCACCGAGTGAAGTTCCCGATGTTGACACAACATCAGCTGGCTCTATTTTCTGGGATGCTAGGCTGACACCGCCAGATAGAACACAACTTAGTGTTTTAGCCGAAAGCAAAACAGGCGATCGTGCTGGTATGTGGCATCATAAGCAAAATGATATTATGAGCAATACTATATCGAGGAATCATACAGAAGGAAGTTGGCTATCTTCTCCCTGTTCTAACTGTCCTTCTCATTTACTTCACGACACGACGGATGAAAGCAAGAGTGTCTCGGCTTGGCCTGTTTCACAGTCTCAAGTATCTATGCTGAACATTGACTGTGCGCTTAATCAAGTTGATAAGGACCACCAAGTTGAGACTGCTACTACAAGTTATCGATTGTTTGGAATTGATCTTATTGATCATTCTAAAAACTCGACCGCGGTAGGGAAACCATCTTCACATGCAGTAAACATAACCGCAGGTACTGCCGAAGTTAGTTCCAGCATGTGGAAAGCATCTTCACATGCAGTAAACATAACCGCAGGTACTGCCGAAGTTAGTTCCAGCATGTTGTCCAGCTCCGATACTGGCCATAAGTCTGACACCTCGAAGGAGGCTTCGCCTTCTATGGAGAGGAAGCAAGAATTGCAACAAGTAACTCCAAAGGATGGTCAAAGCAAGCAAACTTGTATTAGAAGTCGCATCAAGGTTCAAATGCAGGGTGTTGCAGTTGGTCGCGCTGTAGATTTGACAATGTTTAATGGGTATGATCAACTAATCGATGAATTGGAAGAGTTGTTTGAGATAAAGGGACAGCTTCAAAACAGAAATAAGTGGAAAGTTATCTTTACTGATAATGATGGAGATAAGATGCTTGTTGGAGATGATCCATGGCCTGAATTTTGTAATGTTGTAAGAAGAATCTTCATTTGTTCAAGTGAAGATGTGAAGAAGATGAAATCGGGAAGCAAACTACCAAGAAGGAAATTGCTCTTATTTTTAGCTAGAGACACAAGGCATTAA 2145 0.4298 MSDECVSRFLTVSLFVVLGWNKEDSYSQRQKVGGCSDEMYEVQWEKIAGPLVEVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNVRIPTFHAFCKILTASDTSTHGGFSVLRKHATECLPPMDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLAAISNKFTVGMRFKMRFEGDDSAESEKRFSGTIVGVEDISPHWANSKWRSLKVQWDEPASITRPDRVSPWEIEPFVSSASTPSVQPTAAKSKRPRPPSEVPDVDTTSAGSIFWDARLTPPDRTQLSVLAESKTGDRAGMWHHKQNDIMSNTISRNHTEGSWLSSPCSNCPSHLLHDTTDESKSVSAWPVSQSQVSMLNIDCALNQVDKDHQVETATTSYRLFGIDLIDHSKNSTAVGKPSSHAVNITAGTAEVSSSMWKASSHAVNITAGTAEVSSSMLSSSDTGHKSDTSKEASPSMERKQELQQVTPKDGQSKQTCIRSRIKVQMQGVAVGRAVDLTMFNGYDQLIDELEELFEIKGQLQNRNKWKVIFTDNDGDKMLVGDDPWPEFCNVVRRIFICSSEDVKKMKSGSKLPRRKLLLFLARDTRH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02659 714 CDD B3_DNA 131 231 IPR003340 GO:0003677
Car06g02659 714 SMART B3_2 131 233 IPR003340 GO:0003677
Car06g02659 714 MobiDBLite consensus disorder prediction 562 602 - -
Car06g02659 714 ProSiteProfiles PB1 domain profile. 606 687 IPR000270 GO:0005515
Car06g02659 714 Pfam Auxin response factor 257 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car06g02659 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 705 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car06g02659 714 PANTHER AUXIN RESPONSE FACTOR 34 705 - -
Car06g02659 714 Gene3D - 602 694 - -
Car06g02659 714 Coils Coil 630 650 - -
Car06g02659 714 Gene3D - 128 232 IPR015300 -
Car06g02659 714 MobiDBLite consensus disorder prediction 364 392 - -
Car06g02659 714 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Car06g02659 714 MobiDBLite consensus disorder prediction 586 602 - -
Car06g02659 714 Gene3D - 292 367 - -
Car06g02659 714 SUPERFAMILY DNA-binding pseudobarrel domain 126 260 IPR015300 -
Car06g02659 714 SUPERFAMILY CAD & PB1 domains 607 682 - -
Car06g02659 714 Pfam AUX/IAA family 649 689 IPR033389 -
Car06g02659 714 Pfam AUX/IAA family 593 642 IPR033389 -
Car06g02659 714 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02659 Car-Chr6 34154363 34160109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02659 39 705 B3 DNA Binding Superfamily AT4G23980 54.956 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car06g02659 AUX_IAA 1.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02659 K14486 - gmx:100803911 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01141 03 53875279 53880566 Car06g02659 06 34154363 34160109 PCT