Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02603 ATGAAAACATGTCAGAGTGCTGATCTACCGTGCTCTCCTTCGTCCATCAAAACAAAAATGGATTCTCAAGTCAAGTATGCTGTTGTTGTCAAAGTTATAGGCCGTACTGGTTCTAGAGGACAGGTGACTCAAGTTAGAGTGAGGTTTAATGATGATCATTCGCGTCACATCATGAGGAACGTGAAAGGACCAGTCAGAGAAGGAGACACGCTCACCCTACTTGAATCTGAAAGAGAAGCAAGAAGGTTGAGATAG 255 0.4353 MKTCQSADLPCSPSSIKTKMDSQVKYAVVVKVIGRTGSRGQVTQVRVRFNDDHSRHIMRNVKGPVREGDTLTLLESEREARRLR 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02603 84 Hamap 30S ribosomal protein S28e [rps28e]. 20 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g02603 84 PANTHER 40S RIBOSOMAL PROTEIN S28 20 84 - -
Car06g02603 84 SUPERFAMILY Nucleic acid-binding proteins 20 84 IPR012340 -
Car06g02603 84 CDD S1_S28E 25 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g02603 84 Pfam Ribosomal protein S28e 23 83 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g02603 84 ProSitePatterns Ribosomal protein S28e signature. 75 83 IPR028626 -
Car06g02603 84 PANTHER 40S RIBOSOMAL PROTEIN S28 20 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g02603 84 Gene3D - 16 84 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02603 Car-Chr6 31805079 31808535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02603 20 84 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 84.615 1.18e-33 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02603 K02979 - mtr:MTR_4g081180 96.2857