Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02577 ATGCGCGAGATTCTTCACATTCAAGGTGGCCAATGTGGCAACCAAATCGGTGCAAAATTTTGGGAAGTTGTTTGTGCGGAACATGGAATCGACTCAACAGGAAGATACGTTGGTGACTCTGAACTTCAGCTAGAGAGAATCAATGTTTACTACAATGAAGCTAGTTGTGGCCGGTTCGTTCCACGAGCGGTTCTTATGGATCTTGAACCGGGAACTATGGATAGTGTCCGGTCTGGACCGTACGGTCAGATCTTTAGACCGGATAACTTTGTTTTTggtcagagtggtgctggtaataattgggctaaaggtcattatactgaaggcgctgagcttattgattctgttcttgatgttgttcgtaaagaagctgagaactgtgattgtttgcaggcaggatttcaagtatgtcattcactaggtggaggaactggttctggaatgggtacccttctgatttcaaagatcagggaagaatacccagatagaatgatgcttactttctcagtttttccatctcctaaggtttccgacactgttgttgaaccctacaacgccactctctctgttcatcaacttgttgaaaatgccgatgaatgtatggtgcttgataatgaagccttgtacgacatttgcttccgtaccctcaagctcactacaccAAGCTTcggcgatttgaaccatttgatatcagcaactatgtctggtgtcacatgttgtttgagggttgaagatggcttcgactttcattggaaactcgacgtcgattcaggaaatgttcagacggaatatcaacagtatcaagatgcgactgctgaggaggatgagtatgaagaggaagaggaagagTATCAGCAACATGATGAGATATGTTATTCCTCTTCAAATGCTCAATCTAATAAGCTGAAACACAAAATAGAACAAAACTTCAAGAATTGTCTGAGCCTAGGTGCAAACCAAGTTAACAACATGACCGATCCAATAGCTGGTTCGGATAGTCTTTCCTATCTCATATTCTCTCTCTCTCTCCTTAAAACCAACACAAGCATTTTATCTCTCTCTAATATAGCTATGGATGGGTTAAAAACCAAAAAATCTGGTATGTTGATATCTACTTCAGATAATGTCTCCAACACTGATTCCAAAAAATCATTGTCTAGGGTCAAGCACACAAAACTAGCCTTAATCGACTCCAAGATTGCTAAAAGGATATTGGCAAAAAGAAAATTCTTTGCAAGATTGAGAGAAATGAAGTATAATAATTACCTTTCCAATCTTGAGAAGAAGGTACAAGCATTGCAAACAAAAGCAGCATCCATATCTGCACAAAAATCTATATTACAAAGAAGTGCTGAAAAAATAGCTGCTGAGAACAATGTATTAAGGTTGATTTTGGAAAGCAAGCAGCAATACGTGTACTCACAAATGGAGAAAATACAACAATTGAAAGGAGAAATTTTACAACAATACTATGACAACAATGAGACCCTTaagaaggaggaggaagaggaggaggagaaggaagaagaggaagaagatcaggagaatgaggaagaggaggacaaggaggaggaagaagaggaagaTAAATAG 1593 0.2197 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYVGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQAGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRVEDGFDFHWKLDVDSGNVQTEYQQYQDATAEEDEYEEEEEEYQQHDEICYSSSNAQSNKLKHKIEQNFKNCLSLGANQVNNMTDPIAGSDSLSYLIFSLSLLKTNTSILSLSNIAMDGLKTKKSGMLISTSDNVSNTDSKKSLSRVKHTKLALIDSKIAKRILAKRKFFARLREMKYNNYLSNLEKKVQALQTKAASISAQKSILQRSAEKIAAENNVLRLILESKQQYVYSQMEKIQQLKGEILQQYYDNNETLKKEEEEEEEKEEEEEDQENEEEEDKEEEEEEDK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02577 530 Coils Coil 487 529 - -
Car06g02577 530 CDD bZIP_plant_RF2 401 449 IPR044759 GO:0003700|GO:0006355
Car06g02577 530 CDD beta_tubulin 2 242 - -
Car06g02577 530 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Car06g02577 530 Gene3D Tubulin/FtsZ, GTPase domain 1 270 IPR036525 -
Car06g02577 530 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
Car06g02577 530 PRINTS Beta-tubulin signature 231 240 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 PRINTS Beta-tubulin signature 153 165 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 PRINTS Beta-tubulin signature 213 225 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Car06g02577 530 Coils Coil 260 290 - -
Car06g02577 530 PANTHER TUBULIN BETA-2 CHAIN 1 245 - -
Car06g02577 530 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 Coils Coil 416 443 - -
Car06g02577 530 MobiDBLite consensus disorder prediction 498 530 - -
Car06g02577 530 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Car06g02577 530 PANTHER TUBULIN 1 245 IPR000217 GO:0005874|GO:0007017
Car06g02577 530 SMART Tubulin_4 47 246 IPR003008 GO:0005525
Car06g02577 530 MobiDBLite consensus disorder prediction 493 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02577 Car-Chr6 30767461 30775287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02577 357 497 bZIP Transcription Factor Family AT1G06070 40.606 1.10e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02577 K07375 - aof:109829805 484.952