Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02543 ATGTCTTCAATTGGCGCTAGACGTAGATTCAGATCTCCCGCACCACCACTCCCTGCCGCAACTCCGCCCACTCGGAAATCCCGCCGCCGTTGCATCACTGCAACTCCCAATTCCGTCCCTACCGTAATTCAGATGATCGACACCGACGAAAATCAAGTCGAATCGCATGAATCCAATGGCGTGAAATCCAGATGGAATCCCAAAGATGTTGAGCAATTGAGAATGGTGAAAGAAGTGTTGCACATGTCTACTGCACCGTCTACCATAGTGTGCCGTGAAGAGGAGCAAAATGTAGTGTTGGAGTTTTGCAAAGGCTGCGTTGAACATGAAAAGGCTGGGAGTCTCTACATATGTGGATGCCCTGGAACTGGGAAATCTCTCTCTATGGAGAAAGTGAAAGATAGTTTACTCAATTGGGCTACACAGGGAGATTTTCCACTGCCTGATGTTTTATCTGTAAATTGTACATCTCTGTCAAATACATCTGATATTTTCTCAAAGATACTTGGGTTACACAAAGCCCTAGGTAAAAAGGGTTCAGGCACACCCTTACAGCAACTTCAGAACATGTATTCTCATGAATCACCTACAACAAACATGATATTAATAGTAGCGGATGAATTAGATTATCTAATAACCAAAGATAGAGCTGTGCTTCATGATCTTTTCATGCTTACCACTTTCCCATTTTCCAGATGTATACTAATAGGTGTAGCAAATGCAATTGACCTTGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTACTGTTGTAAATTTTCGAGCATACACCAAAGATCAGATCCTTAGGATTCTTGAAGAAAGGCTAAATGAACTTCCTTACATTGTTTTCCAACATCAAGCATTGGAGCTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGAAACGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCAGAAATTAGAGAATCTGCTTGCAGTGTGAATGCTTTGGAAGAGAAATCATCCTCAGAACAAAATCTTCCTACAGCTCCGGATTTTGTAAAAAAACAAGAATTTGATATGGTAAGGATTGATCATATGGCTCTTGCCTTGTCGAAAACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATCCTCTGCTCTTCGATGAAACATTTCCGCGCAGCCAAGAAAGATACAATCCTTGGCGAGTTATATAAATCTTATGCGGCAATATGCAAATCATCACTAATTCCCCCAACAGGAATCATGGAATTTTCAAACATGTGCCGAGTACTAAATGACCAGGGCCTAATTAAACTAGGACAATCTCGAGATGATAAATTGAGAAGAGTGACATCCAAAATAGATGAAGGCGATATTACTTTTGCATTGCAGGGAATCCGTTTTTTTCGAAATTGTCTTCAATGA 1449 0.4099 MSSIGARRRFRSPAPPLPAATPPTRKSRRRCITATPNSVPTVIQMIDTDENQVESHESNGVKSRWNPKDVEQLRMVKEVLHMSTAPSTIVCREEEQNVVLEFCKGCVEHEKAGSLYICGCPGTGKSLSMEKVKDSLLNWATQGDFPLPDVLSVNCTSLSNTSDIFSKILGLHKALGKKGSGTPLQQLQNMYSHESPTTNMILIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPTVVNFRAYTKDQILRILEERLNELPYIVFQHQALELCARKVAAASGDMRNALCICRSAIEMLEAEIRESACSVNALEEKSSSEQNLPTAPDFVKKQEFDMVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRAAKKDTILGELYKSYAAICKSSLIPPTGIMEFSNMCRVLNDQGLIKLGQSRDDKLRRVTSKIDEGDITFALQGIRFFRNCLQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02543 482 Pfam AAA domain 110 227 IPR003593 -
Car06g02543 482 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 24 481 - -
Car06g02543 482 Gene3D - 377 471 IPR036388 -
Car06g02543 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 327 IPR027417 -
Car06g02543 482 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 24 481 - -
Car06g02543 482 Pfam CDC6, C terminal winged helix domain 392 470 IPR015163 -
Car06g02543 482 SMART Cdc6_C_2 392 471 IPR015163 -
Car06g02543 482 Coils Coil 318 338 - -
Car06g02543 482 Gene3D - 69 262 IPR027417 -
Car06g02543 482 CDD AAA 95 253 - -
Car06g02543 482 Gene3D - 263 348 - -
Car06g02543 482 SUPERFAMILY "Winged helix" DNA-binding domain 377 480 IPR036390 -
Car06g02543 482 PIRSF Cdc6 12 482 IPR016314 GO:0006270|GO:0051301
Car06g02543 482 Pfam AAA lid domain 289 323 IPR041083 -
Car06g02543 482 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02543 Car-Chr6 29857798 29862344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02543 20 481 Core DNA Replication Machinery Family AT2G29680 60.000 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02543 K02213 - gmx:100787371 734.947