Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02507 ATGGAAATGGCGTCAAGTCCTCGAACCGTTGAAGAGATCTTCAAAGACTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAATTCTACGCACTTTGTGATCCAGATAAGGATAACTTGTGTCTCTATGGACATCCAAATGAATCATGGGAAGTGACTCTTCCAGCAGAGGAAGTTCCACCTGAGCTTCCGGAGCCAGCTCTCGGAATCAATTTTGCAAGAGATGGCATGAATCGAAGGGACTGGCTTTCCCTTGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGATCTTCCTACTGTTTTTGAAGTTGTAACTGAGAGGAAGCCAATAAAGGACAAGCCCACTGTAGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTGGCAGATGATCAAGGTTACGAGGAGGAAGAAGACGAACACAGTGAAACCCTTTGTGGGACCTGCGGCGGAAACTACAACGCGGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTACCATGGAAAATGCGTGAAGATTACTCCCGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAGCATGAAGAGGGGCAGACCCTAA 723 0.4564 MEMASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLADDQGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02507 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Car06g02507 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Car06g02507 240 CDD PHD_AL_plant 186 236 IPR044104 -
Car06g02507 240 Pfam PHD-finger 187 235 IPR019787 -
Car06g02507 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Car06g02507 240 MobiDBLite consensus disorder prediction 140 177 - -
Car06g02507 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Car06g02507 240 SMART PHD_3 186 234 IPR001965 -
Car06g02507 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
Car06g02507 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Car06g02507 240 MobiDBLite consensus disorder prediction 148 166 - -
Car06g02507 240 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02507 Car-Chr6 29064051 29067666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02507 4 239 Alfin-like Transcription Factor Family AT5G05610 78.059 4.01e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Car06g02507 Alfin 1.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02507 - - gmx:100779170 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02507 06 29064051 29067666 Car06g02507 06 29064051 29067666 ECH
Car03g01282 03 57491630 57495028 Car06g02507 06 29064051 29067666 PCT