Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02483 ATGAGGAGAGTAATTGATGTTCTTTCACCATCTACTTGTTATCATCATCTTCAAAATTCCAATTGGTTGTTCCAAGAGAGTAAGGGAATTATTACCAAATGGACTTTAGAAGAAAACAAATTATTTGAGAATGCTTTAGCTTTATATGATAAGGACACTCCTAACCGTTGGATGAAGGTGGCAAAAATGATTCCAACTAAGACTATTGGTGATGTGATGAAACATTATAGGGATCTTGTAGAAGATGTGAGTGTTATTGAATCAGGGTTGATCCCTTTTCCTATTTACTCTACTACTAGTTCTTTCACTTTGGAATGGGTTAAAAATCAAAACTTTGATGATTGCAACAATTTTTTTAGTGTTAATGGCAAAAGGGGTATTTCCAATAGGCTATTAGAGTATGATAAGAAGAAAGGAGTTCCATGGACTACAGAAGAACACAGGAAATTTCTGATGGGTCTAAAGAAATATGGTAAAGGAGATTGGAAAAACATATCTCATGATTTTGTGACAACAAGGACACCAACACAAGTTGCAAGTCATGCACAAAAATATTTCCTAAGGCAACTTAATGGAGGGAAGGACAAAAAAAGATCTAGTATCCATGACATCACAATGATGAATCTCATAGAGACAAAATCCCCTTCATCGCAAATTTACAAAACTACTTCTCAATTGGTTAAACAAGAATGTAACTTGAAATTTTCATATGAAAATGTGCCTAGTACTGTTTTCAATTCAACAAATGGGAACATGTTCATGACACCATTAATGTGTGATGTTTCATCATATGGATCTAAACCACAAGACCAATGTTTGCTTAGAGATTCTCTTCATGGATGTCAATTTGGACCTTATGATACTATTATGCAAAGGGAATAA 882 0.339 MRRVIDVLSPSTCYHHLQNSNWLFQESKGIITKWTLEENKLFENALALYDKDTPNRWMKVAKMIPTKTIGDVMKHYRDLVEDVSVIESGLIPFPIYSTTSSFTLEWVKNQNFDDCNNFFSVNGKRGISNRLLEYDKKKGVPWTTEEHRKFLMGLKKYGKGDWKNISHDFVTTRTPTQVASHAQKYFLRQLNGGKDKKRSSIHDITMMNLIETKSPSSQIYKTTSQLVKQECNLKFSYENVPSTVFNSTNGNMFMTPLMCDVSSYGSKPQDQCLLRDSLHGCQFGPYDTIMQRE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02483 293 Gene3D - 140 190 - -
Car06g02483 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 190 IPR017930 -
Car06g02483 293 CDD SANT 141 186 IPR001005 -
Car06g02483 293 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 221 IPR043363 -
Car06g02483 293 CDD SANT 33 80 IPR001005 -
Car06g02483 293 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Car06g02483 293 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Car06g02483 293 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Car06g02483 293 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Car06g02483 293 SUPERFAMILY Homeodomain-like 136 189 IPR009057 -
Car06g02483 293 SMART sant 30 82 IPR001005 -
Car06g02483 293 SMART sant 138 188 IPR001005 -
Car06g02483 293 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Car06g02483 293 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
Car06g02483 293 Gene3D - 30 93 - -
Car06g02483 293 ProSiteProfiles Myb-like domain profile. 33 80 IPR001005 -
Car06g02483 293 PANTHER TRANSCRIPTION FACTOR DIVARICATA 3 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02483 Car-Chr6 28012562 28014539 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g02483 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02483 - - cam:101494305 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02483 06 28012562 28014539 Car02g01672 02 45681382 45683814 ECH
Car06g02483 06 28012562 28014539 Car06g02483 06 28012562 28014539 ECH
Car06g02483 06 28012562 28014539 Car05g01239 05 55631520 55634281 ECH
Car06g02483 06 28012562 28014539 Car02g01313 02 39144374 39147570 ECH